Cell atlas - CSDE1 - The Human Protein Atlas

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CSDE1

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TISSUE

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CELL

CANCER

CELL ATLAS RNA EXPRESSION HUMAN CELLS MOUSE CELLS

GENE/PROTEIN

Antibody validation

Dictionary
	Cytosol

Human cell
	Cytosol

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GENERAL INFORMATION
Gene name	CSDE1
Gene description	Cold shock domain containing E1, RNA-binding
Protein class	Cancer-related genes Plasma proteins Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	13
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HUMAN PROTEIN ATLAS INFORMATION
Summary	Mainly localized to the cytosol.
RNA cell category	Expressed in all
Protein evidence	Evidence at protein level
Main location	Localized to the Cytosol (validated)
Mouse	Localized to the Cytosol in mouse cells.

DATA RELIABILITY
Reliability score	Validated based on 2 antibodies. HPA018846 , HPA052221
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ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Expressed in all Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

HUMAN CELLS

Summary

Mainly localized to the cytosol.

Main location

Cytosol (validated)


	Toggle channels	Low High G1 S G2 M N/A

Thumbnail	Antibody	Cell line	Location	Single-cell variation	Cell cycle dependent variation
	HPA018846	A-431	Cytosol
	HPA018846	U-251 MG	Plasma membrane
	HPA018846	U-251 MG	Cytosol
	HPA052221	MCF7	Cytosol
	HPA052221	U-2 OS	Plasma membrane
	HPA052221	U-2 OS	Cytosol
	HPA052221	U-251 MG	Golgi apparatus
	HPA052221	U-251 MG	Cytosol

MOUSE CELLS

Main location

Cytosol

Mouse gene

ENSMUSG00000068823 (version 83)


	Toggle channels	Low High G1 S G2 M N/A

Thumbnail	Antibody	Cell line	Location
	HPA052221	NIH 3T3	Cytosol

GENE INFORMATION
Gene name	CSDE1 (HGNC Symbol)
Synonyms	D1S155E, UNR
Description	Cold shock domain containing E1, RNA-binding (HGNC Symbol)
Entrez gene summary
Chromosome	1
Cytoband	p13.2
Chromosome location (bp)	114716913 - 114758676
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000009307 (version 83.38)
Entrez gene	7812
UniProt	O75534 (UniProt - Evidence at protein level)
neXtProt	NX_O75534
Antibodypedia	CSDE1 antibodies

PROTEIN BROWSER

CSDE1-001	CSDE1-002	CSDE1-003	CSDE1-004	CSDE1-007	CSDE1-008	CSDE1-009	CSDE1-010	CSDE1-013	CSDE1-014	CSDE1-015	CSDE1-016	CSDE1-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CSDE1-001 ENSP00000342408 ENST00000339438	O75534 [Direct mapping] Cold shock domain-containing protein E1 A0A024R0K2 [Target identity:100%; Query identity:100%] Cold shock domain containing E1, RNA-binding, isoform CRA_b Show all	Predicted intracellular proteins Plasma proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006355 [regulation of transcription, DNA-templated] GO:0008584 [male gonad development] GO:0044822 [poly(A) RNA binding] GO:0070937 [CRD-mediated mRNA stability complex] GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay] Show all	767 aa 85.7 kDa	No	0
CSDE1-002 ENSP00000351329 ENST00000358528	O75534 [Direct mapping] Cold shock domain-containing protein E1 A0A024R0E2 [Target identity:100%; Query identity:100%] Cold shock domain containing E1, RNA-binding, isoform CRA_a Show all	Predicted intracellular proteins Plasma proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006355 [regulation of transcription, DNA-templated] GO:0008584 [male gonad development] GO:0044822 [poly(A) RNA binding] GO:0070937 [CRD-mediated mRNA stability complex] GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay] Show all	798 aa 88.9 kDa	No	0
CSDE1-003 ENSP00000261443 ENST00000261443	O75534 [Direct mapping] Cold shock domain-containing protein E1 A0A024R0K2 [Target identity:100%; Query identity:100%] Cold shock domain containing E1, RNA-binding, isoform CRA_b Show all	Predicted intracellular proteins Plasma proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006355 [regulation of transcription, DNA-templated] GO:0008584 [male gonad development] GO:0044822 [poly(A) RNA binding] GO:0070937 [CRD-mediated mRNA stability complex] GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay] Show all	767 aa 85.7 kDa	No	0
CSDE1-004 ENSP00000358543 ENST00000369530	O75534 [Direct mapping] Cold shock domain-containing protein E1 Show all	SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Plasma proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006355 [regulation of transcription, DNA-templated] GO:0008584 [male gonad development] GO:0044822 [poly(A) RNA binding] GO:0070937 [CRD-mediated mRNA stability complex] GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay] Show all	813 aa 90.6 kDa	No	0
CSDE1-007 ENSP00000431297 ENST00000530886	E9PLT0 [Direct mapping] Cold shock domain-containing protein E1 Show all	Predicted intracellular proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0005737 [cytoplasm] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006355 [regulation of transcription, DNA-templated] Show all	668 aa 74.6 kDa	No	0
CSDE1-008 ENSP00000407724 ENST00000438362	O75534 [Direct mapping] Cold shock domain-containing protein E1 Show all	SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Plasma proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006355 [regulation of transcription, DNA-templated] GO:0008584 [male gonad development] GO:0044822 [poly(A) RNA binding] GO:0070937 [CRD-mediated mRNA stability complex] GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay] Show all	844 aa 93.7 kDa	No	0
CSDE1-009 ENSP00000432958 ENST00000534699	O75534 [Direct mapping] Cold shock domain-containing protein E1 A0A024R0E2 [Target identity:100%; Query identity:100%] Cold shock domain containing E1, RNA-binding, isoform CRA_a Show all	Predicted intracellular proteins Plasma proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006355 [regulation of transcription, DNA-templated] GO:0008584 [male gonad development] GO:0044822 [poly(A) RNA binding] GO:0070937 [CRD-mediated mRNA stability complex] GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay] Show all	798 aa 88.9 kDa	No	0
CSDE1-010 ENSP00000431562 ENST00000525878	E9PKN4 [Direct mapping] Cold shock domain-containing protein E1 Show all	Predicted intracellular proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Ezkurdia et al 2014) Show all		46 aa 5.1 kDa	No	0
CSDE1-013 ENSP00000432805 ENST00000525970		Predicted intracellular proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Ezkurdia et al 2014) Show all		7 aa 0.8 kDa	No	0
CSDE1-014 ENSP00000437159 ENST00000529046	E9PNG3 [Direct mapping] Cold shock domain-containing protein E1 Show all	Predicted intracellular proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0006355 [regulation of transcription, DNA-templated] Show all	137 aa 15.5 kDa	No	0
CSDE1-015 ENSP00000431770 ENST00000525132	E9PJK7 [Direct mapping] Cold shock domain-containing protein E1 Show all	Predicted intracellular proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Ezkurdia et al 2014) Show all		36 aa 4.1 kDa	No	0
CSDE1-016 ENSP00000435185 ENST00000534389	E9PLD4 [Direct mapping] Cold shock domain-containing protein E1 Show all	Predicted intracellular proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0006355 [regulation of transcription, DNA-templated] Show all	95 aa 10.7 kDa	No	0
CSDE1-201 ENSP00000481762 ENST00000610726	O75534 [Direct mapping] Cold shock domain-containing protein E1 Show all	SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Plasma proteins Cancer-related genes Mutational cancer driver genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005743 [mitochondrial inner membrane] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006355 [regulation of transcription, DNA-templated] GO:0008584 [male gonad development] GO:0044822 [poly(A) RNA binding] GO:0070937 [CRD-mediated mRNA stability complex] GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay] Show all	844 aa 93.7 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.