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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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PHF7
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

CANCER ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

CANCER ATLAS

Gene description

PHD finger protein 7

Protein class

Predicted intracellular proteins

Protein evidence

Evidence at protein level
Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer
Liver cancer

STAINING SUMMARY

HPA036283
HPA070305

Tissue

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Tissue

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Fragments of moderate luminal membranous positivity was observed in most colorectal cancers and rare cases of ovarian, cervical, endometrial, testis, urothelial, lung and pancreatic cancers. Remaining tissues were weakly stained or negative.

Tissue

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Tissue

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Moderate cytoplasmic positivity often with a granular pattern in a few cases of for example colorectal, testis, breast and prostate cancers. Most other cancer tissues were weakly stained or negative.

GENE INFORMATION

Gene name

PHF7 (HGNC Symbol)

Synonyms

HSPC226, NYD-SP6

Description

PHD finger protein 7 (HGNC Symbol)

Entrez gene summary

Spermatogenesis is a complex process regulated by extracellular and intracellular factors as well as cellular interactions among interstitial cells of the testis, Sertoli cells, and germ cells. This gene is expressed in the testis in Sertoli cells but not germ cells. The protein encoded by this gene contains plant homeodomain (PHD) finger domains, also known as leukemia associated protein (LAP) domains, believed to be involved in transcriptional regulation. The protein, which localizes to the nucleus of transfected cells, has been implicated in the transcriptional regulation of spermatogenesis. Alternate splicing results in multiple transcript variants of this gene. [provided by RefSeq, May 2013]

Chromosome

3

Cytoband

p21.1

Chromosome location (bp)

52410561 - 52423641

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000010318 (version 83.38)

Entrez gene

51533

UniProt

Q9BWX1 (UniProt - Evidence at protein level)

neXtProt

NX_Q9BWX1

Antibodypedia

PHF7 antibodies

PROTEIN BROWSER

PHF7-001
PHF7-004
PHF7-010
PHF7-011
PHF7-201
PHF7-202
PHF7-203

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

PHF7-001
ENSP00000333024
ENST00000327906
Q9BWX1 [Direct mapping]
PHD finger protein 7
A0A024R336 [Target identity:100%; Query identity:100%]
PHD finger protein 7, isoform CRA_a
Show all
Predicted intracellular proteins
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0008270 [zinc ion binding]
Show all
381 aa
43.8 kDa
No 0
PHF7-004
ENSP00000246282
ENST00000347025
Q9BWX1 [Direct mapping]
PHD finger protein 7
Show all
Predicted intracellular proteins
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0008270 [zinc ion binding]
Show all
342 aa
39.3 kDa
No 0
PHF7-010
ENSP00000420521
ENST00000465863
H7C5Q8 [Direct mapping]
PHD finger protein 7
Show all
Predicted intracellular proteins
Show all
63 aa
7.4 kDa
No 0
PHF7-011
ENSP00000417712
ENST00000461861
H7C4N0 [Direct mapping]
PHD finger protein 7
Show all
Predicted intracellular proteins
Show all
GO:0005515 [protein binding]
GO:0008270 [zinc ion binding]
Show all
326 aa
37.4 kDa
No 0
PHF7-201
ENSP00000480003
ENST00000614886
Q9BWX1 [Direct mapping]
PHD finger protein 7
Show all
Predicted intracellular proteins
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0008270 [zinc ion binding]
Show all
342 aa
39.3 kDa
No 0
PHF7-202
ENSP00000483724
ENST00000615126
A0A087X0X8 [Direct mapping]
PHD finger protein 7
Show all
Predicted intracellular proteins
Show all
213 aa
23.9 kDa
No 0
PHF7-203
ENSP00000478693
ENST00000620464
A0A087WUI3 [Direct mapping]
PHD finger protein 7
Show all
Predicted intracellular proteins
Show all
248 aa
28 kDa
No 0

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The Human Protein Atlas project is funded
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