Tissue expression of PRDM6 - Staining in colon

COLON - Expression summary

RNA expression

HPA:	0.7	TPM
GTEx:	2.7	RPKM
FANTOM5:	4.3	Tags Per Million

COLON - Annotated protein expression

Antibody staining	Antibody HPA030322	Antibody HPA030324
Endothelial cells	Not detected	Low
Glandular cells	Low	Low
Peripheral nerve/ganglion	Not detected	Not detected

COLON - HPA RNA-seq

Average TPM	0.7

Male, age 54

Sample 1
TPM: 1.1

Cell types%

Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25

Female, age 57

Sample 2
TPM: 0.3

Cell types%

Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55

Male, age 80

Sample 3
TPM: 0.1

Cell types%

Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40

Male, age 68

Sample 4
TPM: 0.6

Cell types%

Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55

Female, age 68

Sample 5
TPM: 0.4

Cell types%

Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70

Female, age 61

Sample 6
TPM: 1.2

Cell types%

Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30

Male, age 80

Sample 7
TPM: 0.4

Cell types%

Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

Female, age 78

Sample 8
TPM: 0.3

Cell types%

Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50

Male, age 84

Sample 9
TPM: 1.0

Cell types%

Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35

Male, age 80

Sample 10
TPM: 0.2

Cell types%

Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45

Female, age 78

Sample 11
TPM: 1.2

Cell types%

Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55

Female, age 69

Sample 12
TPM: 0.9

Cell types%

Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45

Female, age 72

Sample 13
TPM: 0.7

Cell types%

Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM	2.7

GTEx sample id

RPKM

Colon - Sigmoid

Colon - Sigmoid
RPKM: 4.3

Samples: 149

Max RPKM: 11.1
Min RPKM: 0.8
Std RPKM: 2
Median RPKM: 3.9

GTEX-WYVS-1126-SM-4SOJX

11.1

GTEX-ZPU1-1726-SM-4WWFV

9.9

GTEX-1399R-2126-SM-5K7WZ

9.6

GTEX-13PL7-2426-SM-5J2N3

9.2

GTEX-131XE-1026-SM-5EGKE

9.1

GTEX-XV7Q-2226-SM-4BRVY

9.0

GTEX-ZC5H-2426-SM-4WAZ6

8.5

GTEX-ZAB5-1426-SM-5HL9D

8.3

Show all

Colon - Transverse

Colon - Transverse
RPKM: 1.4

Samples: 196

Max RPKM: 7.3
Min RPKM: 0
Std RPKM: 1.5
Median RPKM: 0.8

GTEX-11P81-1126-SM-5GU5G

7.3

GTEX-U3ZH-1326-SM-4DXSF

7.2

GTEX-111YS-1626-SM-5GZZ9

6.3

GTEX-12WSL-1626-SM-5GCMU

6.3

GTEX-V955-1626-SM-4JBHJ

6.3

GTEX-13U4I-2426-SM-5LU34

6.0

GTEX-RWS6-1826-SM-47JXX

5.5

GTEX-XXEK-1926-SM-4BRVD

5.0

Show all

COLON - FANTOM5 CAGE

Average Tags Per Million	4.3

FANTOM5 sample id

Sample description

Tags Per Million

Colon
Tags Per Million: 4.3

FF:10014-101C5

62,83,84 years, mixed

4.3