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TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:18.8TPM
GTEx:9.9RPKM
FANTOM5:37.7Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:High
 

Antibody staining

Antibody HPA039555

 

Glandular cells

High  
 
 
 

SMALL INTESTINE - HPA RNA-seq

Average TPM

18.8

overview Male, age 65
Sample 1
TPM: 15.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 19.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 19.3
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 20.5

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

9.9

GTEx sample id

RPKM

 

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 9.9
Samples: 88

Max RPKM: 13.5
Min RPKM: 5.8
Std RPKM: 1.6
Median RPKM: 9.8
GTEX-11NSD-1726-SM-5N9C3 13.5
GTEX-11VI4-1626-SM-5EQKO 13.3
GTEX-11P82-0826-SM-5P9GU 13.3
GTEX-13O61-1326-SM-5KM31 13.0
GTEX-11XUK-1426-SM-5EQMG 13.0
GTEX-1399U-2126-SM-5IFEZ 12.9
GTEX-ZF2S-1726-SM-57WFT 12.8
GTEX-131XG-1726-SM-5LZUR 12.8
GTEX-XGQ4-1326-SM-4GIDU 12.4
GTEX-X15G-1426-SM-4PQZK 12.3
GTEX-WFG8-1626-SM-4LVMB 12.2
GTEX-ZP4G-1626-SM-57WGD 12.2
GTEX-1399S-2026-SM-5KM4B 12.1
GTEX-ZVP2-1726-SM-5GU5P 11.6
GTEX-145ME-0926-SM-5O9AR 11.4
GTEX-UPK5-2026-SM-4JBIM 11.2
GTEX-ZYWO-1526-SM-5SIAL 11.2
GTEX-11P7K-1626-SM-5GU63 11.1
GTEX-WFG7-1726-SM-4LVME 11.1
GTEX-ZLFU-1526-SM-4WWBT 11.1
GTEX-13FH7-1226-SM-5IJFK 11.0
GTEX-139YR-2226-SM-5IFFW 11.0
GTEX-117YX-0326-SM-5GICL 11.0
GTEX-WFJO-0926-SM-4LVM2 11.0
GTEX-145LT-1026-SM-5LU9O 10.9
GTEX-ZEX8-1826-SM-57WBH 10.7
GTEX-ZC5H-2326-SM-4WAYT 10.6
GTEX-111CU-1326-SM-5NQ8L 10.6
GTEX-WEY5-1526-SM-4LMJF 10.6
GTEX-14E6E-1626-SM-5RQI7 10.5
GTEX-Z9EW-0926-SM-5CVMM 10.5
GTEX-11EQ9-1326-SM-5985X 10.3
GTEX-13113-1226-SM-5EGHT 10.3
GTEX-WRHK-1026-SM-4MVOD 10.1
GTEX-ZTX8-0526-SM-59HLD 10.1
GTEX-13D11-0726-SM-5LZZB 10.0
GTEX-ZVT2-2126-SM-5NQ93 10.0
GTEX-1399R-2026-SM-5K7WN 10.0
GTEX-ZQG8-2526-SM-57WEQ 10.0
GTEX-ZQUD-0926-SM-57WE3 9.9
GTEX-12BJ1-1926-SM-5HL9Z 9.9
GTEX-11DXX-1626-SM-5H11H 9.9
GTEX-131XF-1326-SM-5GCMQ 9.8
GTEX-XXEK-1026-SM-4BRUW 9.8
GTEX-139T6-1026-SM-5IJGC 9.8
GTEX-ZPCL-1726-SM-57WEO 9.8
GTEX-133LE-1426-SM-5IFH1 9.7
GTEX-11DXZ-1326-SM-5H11X 9.7
GTEX-WH7G-1626-SM-4LVMY 9.7
GTEX-XAJ8-0526-SM-47JYK 9.7
GTEX-XMK1-1826-SM-4B66F 9.6
GTEX-ZZ64-0526-SM-5GZXM 9.6
GTEX-ZTPG-2626-SM-57WFX 9.5
GTEX-13O21-1026-SM-5IJDU 9.5
GTEX-13QBU-1926-SM-5IJEW 9.5
GTEX-ZPIC-2326-SM-57WDW 9.4
GTEX-YB5E-1526-SM-5IFIE 9.4
GTEX-12WSK-1526-SM-5CVNO 9.3
GTEX-Y3IK-1726-SM-4YCCR 9.2
GTEX-1122O-1326-SM-5H11F 9.1
GTEX-13FTW-2026-SM-5IJE2 9.1
GTEX-ZLV1-1126-SM-4WWBW 9.1
GTEX-ZXES-1526-SM-5NQ95 9.1
GTEX-13RTK-0826-SM-5Q5C6 9.1
GTEX-148VJ-2226-SM-5NQ9M 9.0
GTEX-XBED-1426-SM-4AT4G 8.9
GTEX-Y5LM-1626-SM-4VDTB 8.7
GTEX-XUZC-1426-SM-4BRV3 8.7
GTEX-11I78-1126-SM-5A5K5 8.6
GTEX-Y114-1426-SM-4TT6W 8.5
GTEX-VUSG-1726-SM-4KKZL 8.5
GTEX-ZTSS-0926-SM-59865 8.4
GTEX-14DAR-1426-SM-5RQIR 8.4
GTEX-VJYA-0926-SM-4KL1N 8.4
GTEX-13111-1426-SM-5DUW3 8.4
GTEX-13PL7-2626-SM-5IFH4 8.3
GTEX-ZVZP-1826-SM-5GZXB 8.2
GTEX-YF7O-1826-SM-5IFIU 8.2
GTEX-13CF3-1226-SM-5LZXN 8.1
GTEX-ZYFG-2026-SM-5E43Y 8.0
GTEX-Y9LG-1626-SM-5IFHM 7.8
GTEX-ZA64-1226-SM-5HL7B 7.7
GTEX-1192X-2526-SM-59868 7.5
GTEX-111YS-1426-SM-5GID8 7.3
GTEX-13OVI-1926-SM-5IJCG 6.3
GTEX-X5EB-1626-SM-4E3IV 6.3
GTEX-WQUQ-2426-SM-4MVNW 6.1
GTEX-YEC4-1726-SM-4W21E 5.8
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

37.7

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 37.7
FF:10024-101D6 15,40,85 years, mixed 37.7

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by the Knut & Alice Wallenberg foundation.