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SMARCD1

SOFT TISSUE - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:27.2TPM
GTEx:16.5RPKM
FANTOM5:33.8Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:Low
Chondrocytes:Medium
Fibroblasts:Medium
Peripheral nerve:Medium
 

Antibody staining

Antibody HPA004101

  

Adipocytes

 Low  

Chondrocytes

 Medium  

Fibroblasts

 Medium  

Peripheral nerve

 Medium  
 
 
 

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:Low
Fibroblasts:Medium
Peripheral nerve:Not detected
 
 

Antibody staining

Antibody HPA004101

  

Adipocytes

 Low  

Fibroblasts

 Medium  

Peripheral nerve

 Not detected  
    
 
 
 

ADIPOSE TISSUE - HPA RNA-seq

Average TPM

27.2
N/A Female, age 80
Sample 1
TPM: 27.6
Cell types%
Adipocytes: 95
Other cell types: 5
N/A Female, age 45
Sample 2
TPM: 17.3
N/A Female, age 57
Sample 3
TPM: 17.3
Cell types%
Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 74
Sample 4
TPM: 37.6
Cell types%
Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 59
Sample 5
TPM: 36.4
Cell types%
Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM

16.5

GTEx sample id

RPKM
 

Adipose - Subcutaneous
Adipose - Subcutaneous
RPKM: 17.6
Samples: 350

Max RPKM: 27.3
Min RPKM: 10.7
Std RPKM: 2.7
Median RPKM: 17.6
GTEX-S7SF-1826-SM-3K2AD 27.3
GTEX-11EMC-2826-SM-5PNY6 26.5
GTEX-PWOO-2226-SM-2S1P1 24.9
GTEX-QEL4-0326-SM-3GAE5 24.9
GTEX-ZYY3-0226-SM-5E45M 24.6
GTEX-S3XE-1626-SM-3K2AJ 24.5
GTEX-S7SE-0226-SM-2XCD4 24.1
GTEX-S32W-2226-SM-2XCAY 23.8
Show all
 

Adipose - Visceral (Omentum)
Adipose - Visceral (Omentum)
RPKM: 14.9
Samples: 227

Max RPKM: 24.9
Min RPKM: 8.3
Std RPKM: 2.2
Median RPKM: 15
GTEX-1122O-0926-SM-5N9C9 24.9
GTEX-132QS-0826-SM-5K7WV 21.6
GTEX-12WSA-1626-SM-5EGJV 21.0
GTEX-XXEK-1426-SM-4BRW1 20.0
GTEX-12584-2126-SM-5FQUM 19.8
GTEX-11I78-0226-SM-5HL6R 19.7
GTEX-13OVJ-0926-SM-5K7U1 19.7
GTEX-14A6H-1026-SM-5SIAZ 19.2
Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million

33.8

FANTOM5 sample id

Sample description

Tags Per Million
Adipose tissue
Tags Per Million: 33.8
FF:10010-101C1 65,65,76 years, mixed 33.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.