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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:8.6TPM
GTEx:13.2RPKM
FANTOM5:72.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA001648

  

Antibody HPA005631

  

Endothelial cells

 Medium   Low  

Glandular cells

 Medium   Low  

Peripheral nerve/ganglion

 Medium   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

8.6
overview Male, age 54
Sample 1
TPM: 19.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 0.0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 13.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 17.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 0.0
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 0.0
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 19.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 0.0
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 26.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 15.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 0.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 0.0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 0.0
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.2

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 15.6
Samples: 149

Max RPKM: 44.1
Min RPKM: 0
Std RPKM: 13.7
Median RPKM: 20.1
GTEX-13OW5-2826-SM-5KM1G 44.1
GTEX-ZF28-2526-SM-57WFH 42.7
GTEX-11WQK-2526-SM-5CVL8 40.8
GTEX-Y9LG-1326-SM-4VBQB 38.9
GTEX-ZTSS-1226-SM-51MSZ 38.8
GTEX-131XE-1026-SM-5EGKE 38.6
GTEX-ZAB5-1426-SM-5HL9D 36.8
GTEX-148VJ-2426-SM-5NQ9Y 36.7
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 11.5
Samples: 196

Max RPKM: 45.7
Min RPKM: 0
Std RPKM: 11.6
Median RPKM: 10.8
GTEX-11WQK-2126-SM-5EQME 45.7
GTEX-14ICL-1226-SM-5S2RD 38.1
GTEX-XXEK-1926-SM-4BRVD 37.6
GTEX-V955-1626-SM-4JBHJ 36.5
GTEX-111YS-1626-SM-5GZZ9 35.4
GTEX-TKQ1-0626-SM-4DXTS 35.1
GTEX-14C38-2626-SM-5RQI4 35.0
GTEX-13S86-1626-SM-5Q5C5 34.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

72.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 72.7
FF:10014-101C5 62,83,84 years, mixed 72.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.