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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:31.2RPKM
FANTOM5:67.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA041981

 

Antibody CAB034929

 

Glial cells

Low   Not detected  

Neuronal cells

Medium   Low  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

31.2

GTEx sample id

RPKM

26.731.536.412.449.5051015202530354045
 
26.731.536.412.449.5051015202530354045

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 31.2
Samples: 117

Max RPKM: 49.5
Min RPKM: 10.3
Std RPKM: 7.3
Median RPKM: 31.5
GTEX-13NYS-0011-R5a-SM-5MR4D 49.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 49.3
GTEX-132Q8-0011-R5a-SM-5IJDM 46.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 46.2
GTEX-13JVG-0011-R5a-SM-5MR4O 45.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 44.6
GTEX-139TT-0011-R5b-SM-5K7W8 42.3
GTEX-13FLV-0011-R5a-SM-5LZWT 41.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40.2
GTEX-13X6K-0011-R5b-SM-5PNUE 40.0
GTEX-131YS-0011-R5b-SM-5K7YB 39.7
GTEX-WZTO-0011-R5B-SM-3NMC5 39.5
GTEX-1399T-0011-R5b-SM-5IJDK 39.2
GTEX-12WSB-0011-R5b-SM-5GU67 39.1
GTEX-11H98-0011-R5b-SM-57WCF 39.0
GTEX-T5JC-0011-R5A-SM-32PLK 38.2
GTEX-1313W-0011-R5b-SM-5L3EP 37.9
GTEX-N7MT-0011-R5a-SM-2I3G6 37.9
GTEX-13OW6-0011-R5a-SM-5O9BK 37.8
GTEX-WWYW-0011-R5A-SM-3NB3E 37.8
GTEX-13NYB-0011-R5a-SM-5MR45 37.4
GTEX-12WSA-0011-R5b-SM-5GU5I 37.1
GTEX-13G51-0011-R5a-SM-5L3EB 37.0
GTEX-S7SE-0011-R5A-SM-2XCDA 36.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 36.6
GTEX-R55E-0011-R5A-SM-2TC5N 36.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 36.5
GTEX-WVLH-0011-R5A-SM-3MJFW 36.5
GTEX-13X6I-0011-R5a-SM-5PNWW 36.4
GTEX-QVJO-0011-R5A-SM-2S1QM 36.4
GTEX-T6MN-0011-R5A-SM-32QPD 36.3
GTEX-N7MS-0011-R5a-SM-2HMK8 35.8
GTEX-13O3O-0011-R5b-SM-5KM44 35.5
GTEX-ZUA1-0011-R5b-SM-51MTG 35.4
GTEX-14BIM-0011-R5b-SM-5S2RM 35.2
GTEX-WL46-0011-R5A-SM-3LK6V 35.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 34.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 34.8
GTEX-XMD1-0011-R5A-SM-4AT47 34.8
GTEX-11GSP-0011-R5a-SM-57WBE 34.7
GTEX-13CZV-0011-R5a-SM-5K7XA 34.7
GTEX-13OVH-0011-R5b-SM-5KM4L 34.5
GTEX-12ZZX-0011-R5a-SM-5HL89 34.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 34.1
GTEX-13OVL-0011-R5b-SM-5L3FU 33.5
GTEX-13VXU-0011-R5a-SM-5O9D7 33.2
GTEX-12WSF-0011-R5a-SM-5HL8K 33.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 33.0
GTEX-13OW5-0011-R5b-SM-5L3FR 32.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 32.8
GTEX-X4XX-0011-R5A-SM-46MWN 32.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 32.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 32.7
GTEX-X585-0011-R5A-SM-46MVI 32.7
GTEX-13FXS-0011-R5b-SM-5LZYE 32.5
GTEX-145MH-0011-R5a-SM-5P9JT 32.0
GTEX-X261-0011-R5A-SM-3NMB4 32.0
GTEX-13OW7-0011-R5b-SM-5O9DM 31.8
GTEX-13X6J-0011-R5b-SM-5PNWT 31.5
GTEX-144GO-0011-R5a-SM-5PNUR 31.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 30.7
GTEX-RU72-0011-R5A-SM-2TF6U 30.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 30.5
GTEX-1445S-0011-R5a-SM-5PNUS 30.2
GTEX-14ABY-0011-R5b-SM-5SI7B 30.1
GTEX-TSE9-0011-R5A-SM-3DB7J 30.1
GTEX-12WSC-0011-R5b-SM-5CVNS 29.8
GTEX-QMR6-0011-R5A-SM-32PKT 29.5
GTEX-NL3H-0011-R5a-SM-2I3GB 29.3
GTEX-11NV4-0011-R5a-SM-5NQ88 29.2
GTEX-13SLX-0011-R5a-SM-5O9BV 29.2
GTEX-RVPV-0011-R5A-SM-2TF69 29.2
GTEX-145LS-0011-R5a-SM-5SI65 29.1
GTEX-11OF3-0011-R5a-SM-57WB4 29.0
GTEX-YFC4-0011-R5a-SM-4RGLR 28.9
GTEX-ZE7O-0011-R5a-SM-57WBO 28.9
GTEX-P44H-0011-R5A-SM-2XCEX 28.8
GTEX-XOTO-0011-R5A-SM-4B657 28.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 28.6
GTEX-UTHO-0011-R5A-SM-3GIJD 28.5
GTEX-13FLW-0011-R5a-SM-5LZX6 28.4
GTEX-13JUV-0011-R5a-SM-5LZY5 28.4
GTEX-PVOW-0011-R5A-SM-32PL7 28.3
GTEX-13S7M-0011-R5b-SM-5P9HS 28.0
GTEX-13CIG-0011-R5b-SM-5L3F2 27.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 27.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 27.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 26.7
GTEX-144GL-0011-R5b-SM-5PNUJ 26.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 26.5
GTEX-T2IS-0011-R5A-SM-32QP4 26.2
GTEX-Z93S-0011-R5b-SM-4RGNI 26.1
GTEX-139TS-0011-R5b-SM-5J2MZ 25.7
GTEX-ZXG5-0011-R5b-SM-57WBN 25.2
GTEX-ZVT3-0011-R5a-SM-51MSI 24.9
GTEX-ZV68-0011-R5a-SM-4YCDW 24.5
GTEX-13112-0011-R5b-SM-5DUV8 24.4
GTEX-14BIN-0011-R5b-SM-5SI78 24.4
GTEX-OXRN-0011-R5A-SM-2I5EF 24.0
GTEX-NPJ7-0011-R5a-SM-33HBK 23.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 23.7
GTEX-RVPU-0011-R5A-SM-2XCAD 23.7
GTEX-139T8-0011-R5b-SM-5J1MO 23.3
GTEX-NL4W-0011-R5a-SM-2I3GD 23.3
GTEX-OHPN-0011-R5A-SM-2I5FF 23.2
GTEX-12WSD-0011-R5b-SM-5CVNG 23.1
GTEX-11WQC-0011-R5a-SM-5BC74 22.1
GTEX-13CF2-0011-R5a-SM-5LZWS 19.9
GTEX-11UD1-0011-R5b-SM-5P9FP 19.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 18.9
GTEX-12WSH-0011-R5b-SM-5P9F3 18.7
GTEX-YJ89-0011-R5a-SM-4V6GM 17.5
GTEX-S7PM-0011-R5A-SM-3NM8G 16.5
GTEX-1477Z-0011-R5b-SM-5PNUO 15.1
GTEX-13FHP-0011-R5b-SM-5LZY2 14.0
GTEX-13NZA-0011-R5b-SM-5KM4K 12.4
GTEX-145MG-0011-R5b-SM-5S2VU 10.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

67.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 67.1
FF:10164-103B2 76 years, female 67.7
FF:10379-105H1 89 years, female 66.4

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