We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
CLNS1A
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:13.3RPKM
FANTOM5:88.8Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA031707

 

Antibody HPA031708

 

Antibody HPA032045

 

Antibody CAB017840

 

Glial cells

Not detected   Not detected   Not detected   Not detected  

Neuronal cells

Not detected   Not detected   Medium   Not detected  
       
       
       

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

13.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 13.3
Samples: 117

Max RPKM: 24.6
Min RPKM: 7.9
Std RPKM: 2.3
Median RPKM: 13.2
GTEX-12WSA-0011-R5b-SM-5GU5I 24.6
GTEX-12WSB-0011-R5b-SM-5GU67 19.3
GTEX-139TT-0011-R5b-SM-5K7W8 18.1
GTEX-13JUV-0011-R5a-SM-5LZY5 18.0
GTEX-XMD1-0011-R5A-SM-4AT47 17.7
GTEX-144GO-0011-R5a-SM-5PNUR 17.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 17.4
GTEX-11H98-0011-R5b-SM-57WCF 17.3
GTEX-T2IS-0011-R5A-SM-32QP4 16.7
GTEX-132Q8-0011-R5a-SM-5IJDM 16.6
GTEX-NPJ7-0011-R5a-SM-33HBK 16.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 16.4
GTEX-11WQC-0011-R5a-SM-5BC74 16.3
GTEX-T6MN-0011-R5A-SM-32QPD 16.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 15.9
GTEX-QVJO-0011-R5A-SM-2S1QM 15.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 15.4
GTEX-13OW6-0011-R5a-SM-5O9BK 15.2
GTEX-OHPN-0011-R5A-SM-2I5FF 15.2
GTEX-P44H-0011-R5A-SM-2XCEX 15.2
GTEX-13CZV-0011-R5a-SM-5K7XA 15.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 15.0
GTEX-QMR6-0011-R5A-SM-32PKT 15.0
GTEX-13X6I-0011-R5a-SM-5PNWW 14.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 14.9
GTEX-13JVG-0011-R5a-SM-5MR4O 14.8
GTEX-ZUA1-0011-R5b-SM-51MTG 14.8
GTEX-ZV68-0011-R5a-SM-4YCDW 14.8
GTEX-13FLV-0011-R5a-SM-5LZWT 14.6
GTEX-1445S-0011-R5a-SM-5PNUS 14.5
GTEX-139TS-0011-R5b-SM-5J2MZ 14.4
GTEX-ZE7O-0011-R5a-SM-57WBO 14.4
GTEX-PVOW-0011-R5A-SM-32PL7 14.3
GTEX-YFC4-0011-R5a-SM-4RGLR 14.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 14.1
GTEX-11GSP-0011-R5a-SM-57WBE 14.0
GTEX-13X6K-0011-R5b-SM-5PNUE 14.0
GTEX-UTHO-0011-R5A-SM-3GIJD 14.0
GTEX-131YS-0011-R5b-SM-5K7YB 13.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 13.9
GTEX-R55E-0011-R5A-SM-2TC5N 13.9
GTEX-WVLH-0011-R5A-SM-3MJFW 13.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 13.9
GTEX-13G51-0011-R5a-SM-5L3EB 13.8
GTEX-N7MT-0011-R5a-SM-2I3G6 13.8
GTEX-S7SE-0011-R5A-SM-2XCDA 13.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 13.7
GTEX-X261-0011-R5A-SM-3NMB4 13.7
GTEX-11OF3-0011-R5a-SM-57WB4 13.6
GTEX-RVPV-0011-R5A-SM-2TF69 13.6
GTEX-13NYB-0011-R5a-SM-5MR45 13.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 13.5
GTEX-N7MS-0011-R5a-SM-2HMK8 13.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 13.5
GTEX-ZVT3-0011-R5a-SM-51MSI 13.5
GTEX-X4XX-0011-R5A-SM-46MWN 13.3
GTEX-RU72-0011-R5A-SM-2TF6U 13.2
GTEX-WWYW-0011-R5A-SM-3NB3E 13.2
GTEX-WZTO-0011-R5B-SM-3NMC5 13.2
GTEX-1399T-0011-R5b-SM-5IJDK 13.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 13.1
GTEX-NL4W-0011-R5a-SM-2I3GD 13.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 13.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 12.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 12.8
GTEX-X585-0011-R5A-SM-46MVI 12.8
GTEX-12WSC-0011-R5b-SM-5CVNS 12.7
GTEX-12WSD-0011-R5b-SM-5CVNG 12.7
GTEX-13OVL-0011-R5b-SM-5L3FU 12.7
GTEX-T5JC-0011-R5A-SM-32PLK 12.7
GTEX-ZXG5-0011-R5b-SM-57WBN 12.7
GTEX-12ZZX-0011-R5a-SM-5HL89 12.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 12.6
GTEX-139T8-0011-R5b-SM-5J1MO 12.6
GTEX-11NV4-0011-R5a-SM-5NQ88 12.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 12.5
GTEX-14BIM-0011-R5b-SM-5S2RM 12.5
GTEX-TSE9-0011-R5A-SM-3DB7J 12.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 12.4
GTEX-13FLW-0011-R5a-SM-5LZX6 12.4
GTEX-WL46-0011-R5A-SM-3LK6V 12.3
GTEX-1313W-0011-R5b-SM-5L3EP 12.2
GTEX-12WSF-0011-R5a-SM-5HL8K 12.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 12.1
GTEX-S7PM-0011-R5A-SM-3NM8G 12.1
GTEX-14ABY-0011-R5b-SM-5SI7B 12.0
GTEX-13NYS-0011-R5a-SM-5MR4D 11.8
GTEX-13CIG-0011-R5b-SM-5L3F2 11.7
GTEX-OXRN-0011-R5A-SM-2I5EF 11.7
GTEX-13OVH-0011-R5b-SM-5KM4L 11.6
GTEX-13OW7-0011-R5b-SM-5O9DM 11.6
GTEX-13VXU-0011-R5a-SM-5O9D7 11.6
GTEX-NL3H-0011-R5a-SM-2I3GB 11.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 11.6
GTEX-13X6J-0011-R5b-SM-5PNWT 11.5
GTEX-145LS-0011-R5a-SM-5SI65 11.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 11.1
GTEX-XOTO-0011-R5A-SM-4B657 11.0
GTEX-Z93S-0011-R5b-SM-4RGNI 10.9
GTEX-13OW5-0011-R5b-SM-5L3FR 10.7
GTEX-145MH-0011-R5a-SM-5P9JT 10.7
GTEX-13SLX-0011-R5a-SM-5O9BV 10.6
GTEX-YJ89-0011-R5a-SM-4V6GM 10.6
GTEX-13112-0011-R5b-SM-5DUV8 10.5
GTEX-144GL-0011-R5b-SM-5PNUJ 10.5
GTEX-13FXS-0011-R5b-SM-5LZYE 10.4
GTEX-13O3O-0011-R5b-SM-5KM44 10.4
GTEX-11UD1-0011-R5b-SM-5P9FP 10.2
GTEX-RVPU-0011-R5A-SM-2XCAD 10.2
GTEX-12WSH-0011-R5b-SM-5P9F3 10.1
GTEX-14BIN-0011-R5b-SM-5SI78 10.1
GTEX-1477Z-0011-R5b-SM-5PNUO 9.7
GTEX-13FHP-0011-R5b-SM-5LZY2 9.6
GTEX-145MG-0011-R5b-SM-5S2VU 9.6
GTEX-13CF2-0011-R5a-SM-5LZWS 9.5
GTEX-13S7M-0011-R5b-SM-5P9HS 9.5
GTEX-13NZA-0011-R5b-SM-5KM4K 7.9
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

88.8

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 88.8
FF:10379-105H1 89 years, female 90.1
FF:10164-103B2 76 years, female 87.5

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.