Tissue expression of CLNS1A - Staining in cerebral cortex - The Human Protein Atlas

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CLNS1A

TISSUE

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CELL

CANCER

TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation

Dictionary
	Cerebral cortex


Tissue proteome
	Brain
	Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	124.1	TPM
GTEx:	13.2	RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:	Low
Glial cells:	Not detected
Neuronal cells:	Not detected
Neuropil:	Medium

Antibody staining	Antibody HPA031707		Antibody HPA031708		Antibody HPA032045		Antibody CAB017840
Endothelial cells	Low		Low		Not detected		Not detected
Glial cells	Not detected		Not detected		Not detected		Not detected
Neuronal cells	Low		Not detected		Medium		Low
Neuropil	Not detected		Medium		Low		Low

CEREBRAL CORTEX - HPA RNA-seq

Average TPM	124.1

N/A

Male, age 5

Sample 1
TPM: 95.5

overview

Female, age 40

Sample 2
TPM: 187.3

Cell types%

Neuronal cells: 35
Glial cells and endothelial cells: 65

overview

Male, age 70

Sample 3
TPM: 89.4

Cell types%

Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM	13.2

GTEx sample id

RPKM

Brain - Cortex

Brain - Cortex
RPKM: 12.7

Samples: 114

Max RPKM: 17
Min RPKM: 9.5
Std RPKM: 1.4
Median RPKM: 12.7

GTEX-QVJO-1426-SM-2S1QY

17.0

GTEX-ZE7O-3126-SM-5HL5X

17.0

GTEX-144FL-3026-SM-5O99C

16.2

GTEX-13FHO-3026-SM-5J1O9

16.1

GTEX-QVUS-2826-SM-3GADB

16.1

GTEX-13OVJ-2826-SM-5L3GW

15.5

GTEX-QMR6-1426-SM-32PLA

15.2

GTEX-XLM4-3026-SM-4AT6L

15.1

Show all

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 13.7

Samples: 108

Max RPKM: 25
Min RPKM: 6.9
Std RPKM: 2.1
Median RPKM: 13.6

GTEX-12WSD-0011-R10b-SM-5GU79

25.0

GTEX-12ZZY-0011-R10b-SM-5HL7W

19.4

GTEX-XMD1-0011-R10A-SM-4AT4A

17.8

GTEX-139TS-0011-R10a-SM-5K7TU

17.4

GTEX-1445S-0011-R10a-SM-5PNWB

17.3

GTEX-13JUV-0011-R10b-SM-5LZXR

17.0

GTEX-13OVJ-0011-R10b-SM-5L3HT

16.7

GTEX-QVJO-0011-R10A-SM-2S1QJ

16.6

Show all

CEREBRAL CORTEX - FANTOM5 CAGE
No Fantom CAGE analysis found for this gene / tissue

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.