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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:58.8RPKM
FANTOM5:219.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA019004

 

Antibody HPA073666

 

Glial cells

Medium   High  

Neuronal cells

Low   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

58.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 58.8
Samples: 117

Max RPKM: 115.1
Min RPKM: 27.7
Std RPKM: 15
Median RPKM: 57.5
GTEX-139TT-0011-R5b-SM-5K7W8 115.1
GTEX-12WSB-0011-R5b-SM-5GU67 108.0
GTEX-T6MN-0011-R5A-SM-32QPD 96.1
GTEX-12WSA-0011-R5b-SM-5GU5I 95.9
GTEX-P44H-0011-R5A-SM-2XCEX 90.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 84.8
GTEX-11WQC-0011-R5a-SM-5BC74 81.9
GTEX-T2IS-0011-R5A-SM-32QP4 80.8
GTEX-1445S-0011-R5a-SM-5PNUS 80.7
GTEX-13JVG-0011-R5a-SM-5MR4O 80.5
GTEX-RU72-0011-R5A-SM-2TF6U 78.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 77.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 76.3
GTEX-WVLH-0011-R5A-SM-3MJFW 75.5
GTEX-ZV68-0011-R5a-SM-4YCDW 74.6
GTEX-ZE7O-0011-R5a-SM-57WBO 74.0
GTEX-11H98-0011-R5b-SM-57WCF 73.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 73.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 73.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 71.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 70.6
GTEX-OXRN-0011-R5A-SM-2I5EF 70.4
GTEX-XMD1-0011-R5A-SM-4AT47 69.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 69.8
GTEX-13CZV-0011-R5a-SM-5K7XA 69.7
GTEX-NL4W-0011-R5a-SM-2I3GD 69.3
GTEX-144GO-0011-R5a-SM-5PNUR 68.3
GTEX-S7PM-0011-R5A-SM-3NM8G 66.9
GTEX-13CIG-0011-R5b-SM-5L3F2 66.4
GTEX-11GSP-0011-R5a-SM-57WBE 66.3
GTEX-139TS-0011-R5b-SM-5J2MZ 66.2
GTEX-X261-0011-R5A-SM-3NMB4 66.1
GTEX-NPJ7-0011-R5a-SM-33HBK 66.0
GTEX-13FLV-0011-R5a-SM-5LZWT 65.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 65.5
GTEX-ZUA1-0011-R5b-SM-51MTG 65.3
GTEX-131YS-0011-R5b-SM-5K7YB 65.1
GTEX-13G51-0011-R5a-SM-5L3EB 64.7
GTEX-13JUV-0011-R5a-SM-5LZY5 63.5
GTEX-139T8-0011-R5b-SM-5J1MO 63.3
GTEX-N7MT-0011-R5a-SM-2I3G6 63.2
GTEX-13X6I-0011-R5a-SM-5PNWW 62.5
GTEX-QVJO-0011-R5A-SM-2S1QM 62.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 61.9
GTEX-UTHO-0011-R5A-SM-3GIJD 61.7
GTEX-13OW6-0011-R5a-SM-5O9BK 61.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 61.4
GTEX-S7SE-0011-R5A-SM-2XCDA 61.4
GTEX-132Q8-0011-R5a-SM-5IJDM 61.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 61.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 60.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60.7
GTEX-PVOW-0011-R5A-SM-32PL7 59.1
GTEX-13NYS-0011-R5a-SM-5MR4D 59.0
GTEX-TSE9-0011-R5A-SM-3DB7J 58.9
GTEX-11OF3-0011-R5a-SM-57WB4 58.5
GTEX-T5JC-0011-R5A-SM-32PLK 58.4
GTEX-RVPU-0011-R5A-SM-2XCAD 58.0
GTEX-QMR6-0011-R5A-SM-32PKT 57.5
GTEX-12WSD-0011-R5b-SM-5CVNG 56.4
GTEX-13X6K-0011-R5b-SM-5PNUE 56.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 55.9
GTEX-12WSC-0011-R5b-SM-5CVNS 55.5
GTEX-14BIM-0011-R5b-SM-5S2RM 55.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 55.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 55.2
GTEX-R55E-0011-R5A-SM-2TC5N 55.0
GTEX-ZXG5-0011-R5b-SM-57WBN 54.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 53.3
GTEX-ZVT3-0011-R5a-SM-51MSI 53.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 52.2
GTEX-YFC4-0011-R5a-SM-4RGLR 51.8
GTEX-13NYB-0011-R5a-SM-5MR45 51.6
GTEX-1399T-0011-R5b-SM-5IJDK 51.5
GTEX-RVPV-0011-R5A-SM-2TF69 50.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 50.6
GTEX-145MG-0011-R5b-SM-5S2VU 50.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50.3
GTEX-13FLW-0011-R5a-SM-5LZX6 49.8
GTEX-13OVL-0011-R5b-SM-5L3FU 49.6
GTEX-OHPN-0011-R5A-SM-2I5FF 49.5
GTEX-NL3H-0011-R5a-SM-2I3GB 48.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 48.7
GTEX-12WSH-0011-R5b-SM-5P9F3 48.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 48.3
GTEX-13112-0011-R5b-SM-5DUV8 48.0
GTEX-13CF2-0011-R5a-SM-5LZWS 47.8
GTEX-WWYW-0011-R5A-SM-3NB3E 47.8
GTEX-11UD1-0011-R5b-SM-5P9FP 47.6
GTEX-12WSF-0011-R5a-SM-5HL8K 47.5
GTEX-13FXS-0011-R5b-SM-5LZYE 47.3
GTEX-WZTO-0011-R5B-SM-3NMC5 47.2
GTEX-1313W-0011-R5b-SM-5L3EP 46.8
GTEX-N7MS-0011-R5a-SM-2HMK8 46.3
GTEX-XOTO-0011-R5A-SM-4B657 46.3
GTEX-13OW5-0011-R5b-SM-5L3FR 46.0
GTEX-12ZZX-0011-R5a-SM-5HL89 45.9
GTEX-13VXU-0011-R5a-SM-5O9D7 45.3
GTEX-13X6J-0011-R5b-SM-5PNWT 45.2
GTEX-X4XX-0011-R5A-SM-46MWN 44.8
GTEX-145LS-0011-R5a-SM-5SI65 44.5
GTEX-14BIN-0011-R5b-SM-5SI78 44.5
GTEX-13SLX-0011-R5a-SM-5O9BV 44.4
GTEX-YJ89-0011-R5a-SM-4V6GM 44.4
GTEX-11NV4-0011-R5a-SM-5NQ88 42.1
GTEX-144GL-0011-R5b-SM-5PNUJ 42.1
GTEX-13OVH-0011-R5b-SM-5KM4L 41.4
GTEX-13O3O-0011-R5b-SM-5KM44 40.6
GTEX-1477Z-0011-R5b-SM-5PNUO 39.0
GTEX-13FHP-0011-R5b-SM-5LZY2 38.9
GTEX-145MH-0011-R5a-SM-5P9JT 38.9
GTEX-13S7M-0011-R5b-SM-5P9HS 37.6
GTEX-WL46-0011-R5A-SM-3LK6V 33.0
GTEX-13NZA-0011-R5b-SM-5KM4K 32.0
GTEX-X585-0011-R5A-SM-46MVI 31.4
GTEX-Z93S-0011-R5b-SM-4RGNI 27.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

219.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 219.0
FF:10164-103B2 76 years, female 238.6
FF:10379-105H1 89 years, female 199.4

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