We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ARHGEF1
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA KIDNEY

GENE/PROTEIN

Antibody validation


Dictionary

Kidney

Tissue proteome

Kidney

KIDNEY - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:8.7TPM
GTEx:23.6RPKM
FANTOM5:20.8Tags Per Million

KIDNEY - Annotated protein expression

Annotated protein
expression

Cells in glomeruli:Not detected
Cells in tubules:Low
 

Antibody staining

Antibody HPA012924

 

Antibody CAB009502

 

Cells in glomeruli

Medium   Not detected  

Cells in tubules

Medium   Low  
   
   
   

KIDNEY - HPA RNA-seq

Average TPM

8.7

overview Female, age 58
Sample 1
TPM: 15.1
Cell types%
Cells in tubules: 60
Cells in glomeruli: 20
Fibroblasts: 5
Other cell types: 15
overview Female, age 67
Sample 2
TPM: 15.5
Cell types%
Cells in tubules: 70
Cells in glomeruli: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 55
Sample 3
TPM: 21.9
Cell types%
Cells in tubules: 80
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 5
overview Male, age 46
Sample 4
TPM: 14.8
Cell types%
Cells in tubules: 60
Cells in glomeruli: 25
Fibroblasts: 5
Other cell types: 10
overview Female, age 57
Sample 5
TPM: 1.2
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 6
TPM: 1.8
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 20
overview Male, age 73
Sample 7
TPM: 2.0
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Female, age 59
Sample 8
TPM: 4.6
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 15
overview Female, age 48
Sample 9
TPM: 1.5
Cell types%
Cells in tubules: 60
Cells in glomeruli: 5
Fibroblasts: 10
Other cell types: 25

KIDNEY - GTEx RNA-seq

Average RPKM

23.6

GTEx sample id

RPKM

 

Kidney - Cortex

Kidney - Cortex
RPKM: 23.6
Samples: 32

Max RPKM: 59.5
Min RPKM: 8.7
Std RPKM: 12.1
Median RPKM: 20.2
GTEX-1399S-0526-SM-5IJG8 59.5
GTEX-ZLFU-0926-SM-5P9F8 47.6
GTEX-13OVI-1126-SM-5KLZF 45.7
GTEX-RN64-1626-SM-48FD7 44.2
GTEX-ZVZP-0926-SM-5GIDB 39.0
GTEX-12696-0926-SM-5FQTV 32.4
GTEX-147F4-2626-SM-5Q5CS 31.3
GTEX-13112-2126-SM-5GCO4 30.5
GTEX-ZYT6-2226-SM-5GIC9 28.1
GTEX-13RTJ-2226-SM-5S2Q1 27.0
GTEX-XPVG-0526-SM-4B65N 23.7
GTEX-UPIC-1126-SM-4IHLO 22.7
GTEX-13O1R-2526-SM-5N9FW 22.3
GTEX-13OVL-1826-SM-5KLZR 22.3
GTEX-ZYFG-1626-SM-5GZYY 22.0
GTEX-11TTK-1926-SM-5PNW8 20.3
GTEX-QLQW-1626-SM-4R1K1 20.2
GTEX-145MN-0326-SM-5QGQI 19.3
GTEX-11GS4-2326-SM-5A5KS 19.2
GTEX-12WSG-0826-SM-5EQ5A 19.0
GTEX-QDVN-1626-SM-48TZC 17.8
GTEX-1497J-0826-SM-5NQAJ 17.0
GTEX-ZC5H-1726-SM-5HL7X 16.8
GTEX-NPJ8-2226-SM-3TW8D 16.0
GTEX-13OW6-1826-SM-5N9F9 14.4
GTEX-P4QS-1126-SM-3NMD5 14.2
GTEX-T5JC-1526-SM-4DM68 13.8
GTEX-13NYB-1726-SM-5N9G2 11.3
GTEX-11OF3-1326-SM-5N9FJ 10.8
GTEX-Y5V6-2026-SM-5IFHO 10.5
GTEX-N7MS-1626-SM-3LK5F 8.9
GTEX-ZYFD-1526-SM-5NQ7T 8.7
Show all

KIDNEY - FANTOM5 CAGE

Average Tags Per Million

20.8

FANTOM5 sample id

Sample description

Tags Per Million

Kidney
Tags Per Million: 20.8
FF:10017-101C8 60,62,63 years, female 20.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.