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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:21.5RPKM
FANTOM5:158.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA006035

 

Antibody HPA008315

 

Glial cells

Medium   Not detected  

Neuronal cells

Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

21.5

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 21.5
Samples: 117

Max RPKM: 56.4
Min RPKM: 1.6
Std RPKM: 12.6
Median RPKM: 19.5
GTEX-T2IS-0011-R5A-SM-32QP4 56.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 44.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 43.9
GTEX-145MH-0011-R5a-SM-5P9JT 43.3
GTEX-13G51-0011-R5a-SM-5L3EB 42.7
GTEX-WL46-0011-R5A-SM-3LK6V 42.5
GTEX-13O3O-0011-R5b-SM-5KM44 40.9
GTEX-12WSC-0011-R5b-SM-5CVNS 40.6
GTEX-1399T-0011-R5b-SM-5IJDK 40.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40.0
GTEX-13X6J-0011-R5b-SM-5PNWT 39.6
GTEX-13SLX-0011-R5a-SM-5O9BV 39.5
GTEX-PVOW-0011-R5A-SM-32PL7 38.6
GTEX-S7SE-0011-R5A-SM-2XCDA 38.0
GTEX-T6MN-0011-R5A-SM-32QPD 37.2
GTEX-N7MS-0011-R5a-SM-2HMK8 36.4
GTEX-UTHO-0011-R5A-SM-3GIJD 36.2
GTEX-131YS-0011-R5b-SM-5K7YB 35.5
GTEX-WWYW-0011-R5A-SM-3NB3E 35.4
GTEX-1313W-0011-R5b-SM-5L3EP 34.9
GTEX-14BIM-0011-R5b-SM-5S2RM 34.7
GTEX-ZUA1-0011-R5b-SM-51MTG 33.6
GTEX-WZTO-0011-R5B-SM-3NMC5 33.4
GTEX-145LS-0011-R5a-SM-5SI65 33.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 31.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 31.8
GTEX-QVJO-0011-R5A-SM-2S1QM 31.8
GTEX-13FXS-0011-R5b-SM-5LZYE 31.7
GTEX-12WSF-0011-R5a-SM-5HL8K 31.6
GTEX-13VXU-0011-R5a-SM-5O9D7 31.1
GTEX-TSE9-0011-R5A-SM-3DB7J 30.9
GTEX-X585-0011-R5A-SM-46MVI 30.8
GTEX-11OF3-0011-R5a-SM-57WB4 30.7
GTEX-Z93S-0011-R5b-SM-4RGNI 30.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 30.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 29.8
GTEX-11GSP-0011-R5a-SM-57WBE 29.7
GTEX-WVLH-0011-R5A-SM-3MJFW 29.5
GTEX-14ABY-0011-R5b-SM-5SI7B 29.3
GTEX-N7MT-0011-R5a-SM-2I3G6 28.5
GTEX-P44H-0011-R5A-SM-2XCEX 28.5
GTEX-R55E-0011-R5A-SM-2TC5N 28.3
GTEX-T5JC-0011-R5A-SM-32PLK 28.0
GTEX-13OVL-0011-R5b-SM-5L3FU 27.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 27.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 26.8
GTEX-RU72-0011-R5A-SM-2TF6U 26.5
GTEX-11NV4-0011-R5a-SM-5NQ88 26.3
GTEX-13FLW-0011-R5a-SM-5LZX6 26.1
GTEX-13S7M-0011-R5b-SM-5P9HS 24.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 24.0
GTEX-13OW6-0011-R5a-SM-5O9BK 23.9
GTEX-132Q8-0011-R5a-SM-5IJDM 23.7
GTEX-13X6K-0011-R5b-SM-5PNUE 23.7
GTEX-13OW7-0011-R5b-SM-5O9DM 23.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 23.2
GTEX-13X6I-0011-R5a-SM-5PNWW 21.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 21.6
GTEX-11H98-0011-R5b-SM-57WCF 19.5
GTEX-13JUV-0011-R5a-SM-5LZY5 19.5
GTEX-12WSD-0011-R5b-SM-5CVNG 19.4
GTEX-13FLV-0011-R5a-SM-5LZWT 19.4
GTEX-RVPV-0011-R5A-SM-2TF69 19.0
GTEX-13CZV-0011-R5a-SM-5K7XA 18.6
GTEX-13OVH-0011-R5b-SM-5KM4L 18.6
GTEX-RVPU-0011-R5A-SM-2XCAD 18.5
GTEX-XOTO-0011-R5A-SM-4B657 17.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 17.5
GTEX-13NYS-0011-R5a-SM-5MR4D 16.9
GTEX-139TT-0011-R5b-SM-5K7W8 16.8
GTEX-13NYB-0011-R5a-SM-5MR45 16.4
GTEX-13OW5-0011-R5b-SM-5L3FR 16.3
GTEX-14BIN-0011-R5b-SM-5SI78 16.0
GTEX-YFC4-0011-R5a-SM-4RGLR 15.7
GTEX-ZE7O-0011-R5a-SM-57WBO 15.5
GTEX-NL4W-0011-R5a-SM-2I3GD 14.4
GTEX-XMD1-0011-R5A-SM-4AT47 13.9
GTEX-OHPN-0011-R5A-SM-2I5FF 13.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 12.9
GTEX-NL3H-0011-R5a-SM-2I3GB 12.9
GTEX-ZXG5-0011-R5b-SM-57WBN 12.8
GTEX-QMR6-0011-R5A-SM-32PKT 12.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 12.5
GTEX-12ZZX-0011-R5a-SM-5HL89 12.2
GTEX-OXRN-0011-R5A-SM-2I5EF 11.1
GTEX-X4XX-0011-R5A-SM-46MWN 11.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 10.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 10.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 9.9
GTEX-144GL-0011-R5b-SM-5PNUJ 8.9
GTEX-13JVG-0011-R5a-SM-5MR4O 8.7
GTEX-12WSB-0011-R5b-SM-5GU67 8.5
GTEX-YJ89-0011-R5a-SM-4V6GM 8.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 8.0
GTEX-144GO-0011-R5a-SM-5PNUR 7.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 7.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 7.6
GTEX-13CIG-0011-R5b-SM-5L3F2 7.5
GTEX-11WQC-0011-R5a-SM-5BC74 6.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 6.6
GTEX-12WSA-0011-R5b-SM-5GU5I 6.3
GTEX-X261-0011-R5A-SM-3NMB4 5.8
GTEX-12WSH-0011-R5b-SM-5P9F3 5.5
GTEX-ZV68-0011-R5a-SM-4YCDW 5.2
GTEX-ZVT3-0011-R5a-SM-51MSI 5.2
GTEX-139TS-0011-R5b-SM-5J2MZ 5.0
GTEX-13FHP-0011-R5b-SM-5LZY2 5.0
GTEX-13112-0011-R5b-SM-5DUV8 4.2
GTEX-NPJ7-0011-R5a-SM-33HBK 4.1
GTEX-1445S-0011-R5a-SM-5PNUS 3.7
GTEX-1477Z-0011-R5b-SM-5PNUO 3.6
GTEX-S7PM-0011-R5A-SM-3NM8G 3.4
GTEX-13CF2-0011-R5a-SM-5LZWS 2.9
GTEX-139T8-0011-R5b-SM-5J1MO 2.4
GTEX-11UD1-0011-R5b-SM-5P9FP 2.1
GTEX-13NZA-0011-R5b-SM-5KM4K 1.9
GTEX-145MG-0011-R5b-SM-5S2VU 1.6
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

158.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 158.4
FF:10164-103B2 76 years, female 195.4
FF:10379-105H1 89 years, female 121.4

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