We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
FGFR1
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:8.4RPKM
FANTOM5:46.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA056402

 

Antibody CAB033614

 

Glial cells

Not detected   Low  

Neuronal cells

Not detected   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

8.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 8.4
Samples: 117

Max RPKM: 20.6
Min RPKM: 3
Std RPKM: 2.9
Median RPKM: 8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 19.7
GTEX-XMD1-0011-R5A-SM-4AT47 17.1
GTEX-132Q8-0011-R5a-SM-5IJDM 16.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 15.5
GTEX-WWYW-0011-R5A-SM-3NB3E 13.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 13.4
GTEX-OHPN-0011-R5A-SM-2I5FF 13.3
GTEX-13JVG-0011-R5a-SM-5MR4O 12.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 12.7
GTEX-13NYS-0011-R5a-SM-5MR4D 12.5
GTEX-13OW6-0011-R5a-SM-5O9BK 12.5
GTEX-139TS-0011-R5b-SM-5J2MZ 12.1
GTEX-X261-0011-R5A-SM-3NMB4 11.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 11.3
GTEX-13X6I-0011-R5a-SM-5PNWW 11.2
GTEX-NL4W-0011-R5a-SM-2I3GD 11.2
GTEX-13FLV-0011-R5a-SM-5LZWT 10.6
GTEX-1445S-0011-R5a-SM-5PNUS 10.6
GTEX-11GSP-0011-R5a-SM-57WBE 10.5
GTEX-RVPV-0011-R5A-SM-2TF69 10.4
GTEX-NL3H-0011-R5a-SM-2I3GB 10.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 10.3
GTEX-ZE7O-0011-R5a-SM-57WBO 10.1
GTEX-139T8-0011-R5b-SM-5J1MO 9.9
GTEX-X4XX-0011-R5A-SM-46MWN 9.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 9.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 9.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 9.5
GTEX-T5JC-0011-R5A-SM-32PLK 9.5
GTEX-ZV68-0011-R5a-SM-4YCDW 9.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 9.4
GTEX-N7MT-0011-R5a-SM-2I3G6 9.3
GTEX-13JUV-0011-R5a-SM-5LZY5 9.1
GTEX-11H98-0011-R5b-SM-57WCF 9.0
GTEX-13CIG-0011-R5b-SM-5L3F2 9.0
GTEX-XOTO-0011-R5A-SM-4B657 8.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 8.9
GTEX-13S7M-0011-R5b-SM-5P9HS 8.8
GTEX-YFC4-0011-R5a-SM-4RGLR 8.8
GTEX-13OW5-0011-R5b-SM-5L3FR 8.7
GTEX-WVLH-0011-R5A-SM-3MJFW 8.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 8.6
GTEX-RU72-0011-R5A-SM-2TF6U 8.6
GTEX-144GO-0011-R5a-SM-5PNUR 8.5
GTEX-13OVH-0011-R5b-SM-5KM4L 8.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 8.4
GTEX-ZXG5-0011-R5b-SM-57WBN 8.4
GTEX-13FXS-0011-R5b-SM-5LZYE 8.3
GTEX-12WSB-0011-R5b-SM-5GU67 8.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 8.2
GTEX-13OVL-0011-R5b-SM-5L3FU 8.2
GTEX-WZTO-0011-R5B-SM-3NMC5 8.2
GTEX-12ZZX-0011-R5a-SM-5HL89 8.1
GTEX-13OW7-0011-R5b-SM-5O9DM 8.1
GTEX-N7MS-0011-R5a-SM-2HMK8 8.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 8.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 8.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 8.0
GTEX-13SLX-0011-R5a-SM-5O9BV 7.9
GTEX-144GL-0011-R5b-SM-5PNUJ 7.8
GTEX-X585-0011-R5A-SM-46MVI 7.8
GTEX-13112-0011-R5b-SM-5DUV8 7.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 7.7
GTEX-R55E-0011-R5A-SM-2TC5N 7.5
GTEX-14BIM-0011-R5b-SM-5S2RM 7.4
GTEX-TSE9-0011-R5A-SM-3DB7J 7.4
GTEX-12WSH-0011-R5b-SM-5P9F3 7.3
GTEX-13X6K-0011-R5b-SM-5PNUE 7.3
GTEX-13CZV-0011-R5a-SM-5K7XA 7.2
GTEX-13VXU-0011-R5a-SM-5O9D7 7.2
GTEX-NPJ7-0011-R5a-SM-33HBK 7.2
GTEX-OXRN-0011-R5A-SM-2I5EF 7.2
GTEX-QVJO-0011-R5A-SM-2S1QM 7.2
GTEX-13FLW-0011-R5a-SM-5LZX6 7.1
GTEX-13G51-0011-R5a-SM-5L3EB 7.1
GTEX-S7SE-0011-R5A-SM-2XCDA 7.1
GTEX-ZVT3-0011-R5a-SM-51MSI 7.1
GTEX-11UD1-0011-R5b-SM-5P9FP 7.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 7.0
GTEX-13NYB-0011-R5a-SM-5MR45 7.0
GTEX-145LS-0011-R5a-SM-5SI65 7.0
GTEX-14BIN-0011-R5b-SM-5SI78 6.9
GTEX-PVOW-0011-R5A-SM-32PL7 6.9
GTEX-S7PM-0011-R5A-SM-3NM8G 6.9
GTEX-11WQC-0011-R5a-SM-5BC74 6.7
GTEX-12WSD-0011-R5b-SM-5CVNG 6.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 6.7
GTEX-T6MN-0011-R5A-SM-32QPD 6.5
GTEX-1399T-0011-R5b-SM-5IJDK 6.4
GTEX-13O3O-0011-R5b-SM-5KM44 6.3
GTEX-14ABY-0011-R5b-SM-5SI7B 6.3
GTEX-P44H-0011-R5A-SM-2XCEX 6.3
GTEX-RVPU-0011-R5A-SM-2XCAD 6.3
GTEX-139TT-0011-R5b-SM-5K7W8 6.2
GTEX-UTHO-0011-R5A-SM-3GIJD 6.2
GTEX-QMR6-0011-R5A-SM-32PKT 6.1
GTEX-12WSA-0011-R5b-SM-5GU5I 6.0
GTEX-11NV4-0011-R5a-SM-5NQ88 5.9
GTEX-131YS-0011-R5b-SM-5K7YB 5.9
GTEX-YJ89-0011-R5a-SM-4V6GM 5.9
GTEX-ZUA1-0011-R5b-SM-51MTG 5.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 5.8
GTEX-1477Z-0011-R5b-SM-5PNUO 5.7
GTEX-13X6J-0011-R5b-SM-5PNWT 5.6
GTEX-145MH-0011-R5a-SM-5P9JT 5.6
GTEX-13FHP-0011-R5b-SM-5LZY2 5.5
GTEX-12WSF-0011-R5a-SM-5HL8K 5.4
GTEX-13CF2-0011-R5a-SM-5LZWS 5.4
GTEX-13NZA-0011-R5b-SM-5KM4K 5.4
GTEX-11OF3-0011-R5a-SM-57WB4 5.2
GTEX-145MG-0011-R5b-SM-5S2VU 5.1
GTEX-WL46-0011-R5A-SM-3LK6V 4.7
GTEX-Z93S-0011-R5b-SM-4RGNI 4.5
GTEX-12WSC-0011-R5b-SM-5CVNS 4.4
GTEX-1313W-0011-R5b-SM-5L3EP 4.4
GTEX-T2IS-0011-R5A-SM-32QP4 3.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

46.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 46.1
FF:10164-103B2 76 years, female 57.0
FF:10379-105H1 89 years, female 35.1

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.