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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:43.1RPKM
FANTOM5:1112.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

High   Medium   High  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

43.1

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 43.1
Samples: 117

Max RPKM: 137.5
Min RPKM: 6
Std RPKM: 25.6
Median RPKM: 40.7
GTEX-T2IS-0011-R5A-SM-32QP4 137.5
GTEX-139TT-0011-R5b-SM-5K7W8 113.8
GTEX-UTHO-0011-R5A-SM-3GIJD 110.0
GTEX-T6MN-0011-R5A-SM-32QPD 98.2
GTEX-P44H-0011-R5A-SM-2XCEX 92.6
GTEX-131YS-0011-R5b-SM-5K7YB 91.6
GTEX-11OF3-0011-R5a-SM-57WB4 89.3
GTEX-QVJO-0011-R5A-SM-2S1QM 86.9
GTEX-S7SE-0011-R5A-SM-2XCDA 85.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 84.1
GTEX-1313W-0011-R5b-SM-5L3EP 80.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 78.2
GTEX-PVOW-0011-R5A-SM-32PL7 77.8
GTEX-13G51-0011-R5a-SM-5L3EB 76.5
GTEX-12WSC-0011-R5b-SM-5CVNS 76.2
GTEX-145MH-0011-R5a-SM-5P9JT 76.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 72.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 72.6
GTEX-13X6J-0011-R5b-SM-5PNWT 69.5
GTEX-T5JC-0011-R5A-SM-32PLK 65.4
GTEX-145LS-0011-R5a-SM-5SI65 64.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 64.5
GTEX-14ABY-0011-R5b-SM-5SI7B 63.7
GTEX-1399T-0011-R5b-SM-5IJDK 62.7
GTEX-N7MT-0011-R5a-SM-2I3G6 62.7
GTEX-14BIM-0011-R5b-SM-5S2RM 62.0
GTEX-WVLH-0011-R5A-SM-3MJFW 61.8
GTEX-RU72-0011-R5A-SM-2TF6U 60.3
GTEX-WL46-0011-R5A-SM-3LK6V 60.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 56.7
GTEX-13VXU-0011-R5a-SM-5O9D7 54.7
GTEX-11H98-0011-R5b-SM-57WCF 53.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 52.2
GTEX-N7MS-0011-R5a-SM-2HMK8 52.0
GTEX-R55E-0011-R5A-SM-2TC5N 51.9
GTEX-X585-0011-R5A-SM-46MVI 51.2
GTEX-WZTO-0011-R5B-SM-3NMC5 49.3
GTEX-13SLX-0011-R5a-SM-5O9BV 49.0
GTEX-WWYW-0011-R5A-SM-3NB3E 48.9
GTEX-13CZV-0011-R5a-SM-5K7XA 48.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 48.5
GTEX-Z93S-0011-R5b-SM-4RGNI 48.5
GTEX-ZUA1-0011-R5b-SM-51MTG 47.7
GTEX-13O3O-0011-R5b-SM-5KM44 47.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 47.1
GTEX-11GSP-0011-R5a-SM-57WBE 46.4
GTEX-13JUV-0011-R5a-SM-5LZY5 46.2
GTEX-11NV4-0011-R5a-SM-5NQ88 44.8
GTEX-13FXS-0011-R5b-SM-5LZYE 44.5
GTEX-13X6I-0011-R5a-SM-5PNWW 43.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 43.6
GTEX-13OW6-0011-R5a-SM-5O9BK 43.4
GTEX-12WSD-0011-R5b-SM-5CVNG 43.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 43.0
GTEX-13X6K-0011-R5b-SM-5PNUE 42.8
GTEX-12WSF-0011-R5a-SM-5HL8K 42.5
GTEX-13OVL-0011-R5b-SM-5L3FU 42.4
GTEX-132Q8-0011-R5a-SM-5IJDM 41.3
GTEX-TSE9-0011-R5A-SM-3DB7J 40.7
GTEX-13FLW-0011-R5a-SM-5LZX6 39.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 39.6
GTEX-RVPU-0011-R5A-SM-2XCAD 39.5
GTEX-13S7M-0011-R5b-SM-5P9HS 37.8
GTEX-13NYS-0011-R5a-SM-5MR4D 36.0
GTEX-ZE7O-0011-R5a-SM-57WBO 35.0
GTEX-NL4W-0011-R5a-SM-2I3GD 33.9
GTEX-13OW7-0011-R5b-SM-5O9DM 33.6
GTEX-12WSB-0011-R5b-SM-5GU67 33.0
GTEX-13OW5-0011-R5b-SM-5L3FR 32.6
GTEX-OHPN-0011-R5A-SM-2I5FF 32.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 31.6
GTEX-NL3H-0011-R5a-SM-2I3GB 31.0
GTEX-XMD1-0011-R5A-SM-4AT47 30.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 29.8
GTEX-13OVH-0011-R5b-SM-5KM4L 29.4
GTEX-OXRN-0011-R5A-SM-2I5EF 28.3
GTEX-ZXG5-0011-R5b-SM-57WBN 28.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 28.0
GTEX-144GO-0011-R5a-SM-5PNUR 27.4
GTEX-RVPV-0011-R5A-SM-2TF69 27.4
GTEX-YFC4-0011-R5a-SM-4RGLR 27.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 26.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 26.7
GTEX-12ZZX-0011-R5a-SM-5HL89 25.7
GTEX-13NYB-0011-R5a-SM-5MR45 25.5
GTEX-14BIN-0011-R5b-SM-5SI78 25.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 25.4
GTEX-13FLV-0011-R5a-SM-5LZWT 24.6
GTEX-QMR6-0011-R5A-SM-32PKT 24.5
GTEX-12WSH-0011-R5b-SM-5P9F3 24.1
GTEX-XOTO-0011-R5A-SM-4B657 22.8
GTEX-YJ89-0011-R5a-SM-4V6GM 22.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 22.5
GTEX-11WQC-0011-R5a-SM-5BC74 21.2
GTEX-12WSA-0011-R5b-SM-5GU5I 20.9
GTEX-13CIG-0011-R5b-SM-5L3F2 20.8
GTEX-13JVG-0011-R5a-SM-5MR4O 19.9
GTEX-X4XX-0011-R5A-SM-46MWN 17.9
GTEX-NPJ7-0011-R5a-SM-33HBK 17.6
GTEX-X261-0011-R5A-SM-3NMB4 16.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 15.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 14.5
GTEX-ZV68-0011-R5a-SM-4YCDW 14.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 14.3
GTEX-ZVT3-0011-R5a-SM-51MSI 13.7
GTEX-139TS-0011-R5b-SM-5J2MZ 12.9
GTEX-13112-0011-R5b-SM-5DUV8 11.1
GTEX-144GL-0011-R5b-SM-5PNUJ 10.9
GTEX-S7PM-0011-R5A-SM-3NM8G 10.4
GTEX-1445S-0011-R5a-SM-5PNUS 10.3
GTEX-1477Z-0011-R5b-SM-5PNUO 10.1
GTEX-13FHP-0011-R5b-SM-5LZY2 10.0
GTEX-139T8-0011-R5b-SM-5J1MO 8.7
GTEX-11UD1-0011-R5b-SM-5P9FP 7.2
GTEX-13CF2-0011-R5a-SM-5LZWS 7.2
GTEX-145MG-0011-R5b-SM-5S2VU 6.2
GTEX-13NZA-0011-R5b-SM-5KM4K 6.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

1112.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 1112.1
FF:10164-103B2 76 years, female 1268.3
FF:10379-105H1 89 years, female 955.9

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