We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ABCB1
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:7.3RPKM
FANTOM5:43.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA002199

 

Antibody CAB001716

 

Glial cells

Not detected   Low  

Neuronal cells

Not detected   Not detected  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

7.3

GTEx sample id

RPKM

4.66.89.51.016.102468101214161820
 
4.66.89.51.016.102468101214161820

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 7.3
Samples: 117

Max RPKM: 20.7
Min RPKM: 1
Std RPKM: 3.4
Median RPKM: 6.8
GTEX-X585-0011-R5A-SM-46MVI 20.7
GTEX-QMR6-0011-R5A-SM-32PKT 16.1
GTEX-13X6I-0011-R5a-SM-5PNWW 15.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 14.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 13.5
GTEX-OHPN-0011-R5A-SM-2I5FF 12.7
GTEX-13NZA-0011-R5b-SM-5KM4K 12.6
GTEX-PVOW-0011-R5A-SM-32PL7 12.6
GTEX-QVJO-0011-R5A-SM-2S1QM 12.5
GTEX-ZVT3-0011-R5a-SM-51MSI 12.4
GTEX-139TS-0011-R5b-SM-5J2MZ 12.1
GTEX-S7PM-0011-R5A-SM-3NM8G 12.0
GTEX-X4XX-0011-R5A-SM-46MWN 12.0
GTEX-N7MS-0011-R5a-SM-2HMK8 11.5
GTEX-P44H-0011-R5A-SM-2XCEX 11.4
GTEX-11UD1-0011-R5b-SM-5P9FP 11.0
GTEX-11H98-0011-R5b-SM-57WCF 10.9
GTEX-14BIN-0011-R5b-SM-5SI78 10.8
GTEX-R55E-0011-R5A-SM-2TC5N 10.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 10.7
GTEX-N7MT-0011-R5a-SM-2I3G6 10.4
GTEX-WL46-0011-R5A-SM-3LK6V 10.4
GTEX-12WSF-0011-R5a-SM-5HL8K 10.3
GTEX-NPJ7-0011-R5a-SM-33HBK 10.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 10.2
GTEX-144GL-0011-R5b-SM-5PNUJ 10.2
GTEX-NL3H-0011-R5a-SM-2I3GB 10.1
GTEX-WZTO-0011-R5B-SM-3NMC5 10.0
GTEX-WVLH-0011-R5A-SM-3MJFW 9.6
GTEX-14ABY-0011-R5b-SM-5SI7B 9.5
GTEX-13FHP-0011-R5b-SM-5LZY2 9.4
GTEX-13CF2-0011-R5a-SM-5LZWS 9.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 9.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 9.1
GTEX-1477Z-0011-R5b-SM-5PNUO 9.1
GTEX-1399T-0011-R5b-SM-5IJDK 9.0
GTEX-T2IS-0011-R5A-SM-32QP4 8.7
GTEX-145LS-0011-R5a-SM-5SI65 8.6
GTEX-XMD1-0011-R5A-SM-4AT47 8.6
GTEX-12WSB-0011-R5b-SM-5GU67 8.5
GTEX-RVPV-0011-R5A-SM-2TF69 8.5
GTEX-YFC4-0011-R5a-SM-4RGLR 8.5
GTEX-RU72-0011-R5A-SM-2TF6U 8.4
GTEX-13OW6-0011-R5a-SM-5O9BK 8.2
GTEX-12ZZX-0011-R5a-SM-5HL89 8.0
GTEX-RVPU-0011-R5A-SM-2XCAD 8.0
GTEX-13112-0011-R5b-SM-5DUV8 7.9
GTEX-1445S-0011-R5a-SM-5PNUS 7.9
GTEX-13NYB-0011-R5a-SM-5MR45 7.8
GTEX-13OVL-0011-R5b-SM-5L3FU 7.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 7.6
GTEX-X261-0011-R5A-SM-3NMB4 7.6
GTEX-139T8-0011-R5b-SM-5J1MO 7.4
GTEX-13JVG-0011-R5a-SM-5MR4O 7.4
GTEX-145MH-0011-R5a-SM-5P9JT 7.3
GTEX-NL4W-0011-R5a-SM-2I3GD 7.2
GTEX-13OVH-0011-R5b-SM-5KM4L 6.9
GTEX-13X6K-0011-R5b-SM-5PNUE 6.9
GTEX-13O3O-0011-R5b-SM-5KM44 6.8
GTEX-11WQC-0011-R5a-SM-5BC74 6.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 6.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 6.6
GTEX-13OW7-0011-R5b-SM-5O9DM 6.4
GTEX-132Q8-0011-R5a-SM-5IJDM 6.3
GTEX-13FLW-0011-R5a-SM-5LZX6 6.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 6.3
GTEX-WWYW-0011-R5A-SM-3NB3E 6.3
GTEX-13SLX-0011-R5a-SM-5O9BV 6.2
GTEX-12WSD-0011-R5b-SM-5CVNG 6.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 6.1
GTEX-11GSP-0011-R5a-SM-57WBE 6.0
GTEX-13FLV-0011-R5a-SM-5LZWT 6.0
GTEX-144GO-0011-R5a-SM-5PNUR 6.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 6.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 5.9
GTEX-131YS-0011-R5b-SM-5K7YB 5.8
GTEX-13VXU-0011-R5a-SM-5O9D7 5.8
GTEX-13CIG-0011-R5b-SM-5L3F2 5.6
GTEX-13S7M-0011-R5b-SM-5P9HS 5.6
GTEX-13X6J-0011-R5b-SM-5PNWT 5.6
GTEX-11NV4-0011-R5a-SM-5NQ88 5.5
GTEX-1313W-0011-R5b-SM-5L3EP 5.2
GTEX-S7SE-0011-R5A-SM-2XCDA 5.1
GTEX-11OF3-0011-R5a-SM-57WB4 5.0
GTEX-13FXS-0011-R5b-SM-5LZYE 4.8
GTEX-13NYS-0011-R5a-SM-5MR4D 4.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 4.8
GTEX-ZUA1-0011-R5b-SM-51MTG 4.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 4.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 4.5
GTEX-T5JC-0011-R5A-SM-32PLK 4.5
GTEX-ZXG5-0011-R5b-SM-57WBN 4.5
GTEX-12WSH-0011-R5b-SM-5P9F3 4.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 4.4
GTEX-XOTO-0011-R5A-SM-4B657 4.3
GTEX-12WSC-0011-R5b-SM-5CVNS 4.0
GTEX-ZE7O-0011-R5a-SM-57WBO 4.0
GTEX-145MG-0011-R5b-SM-5S2VU 3.7
GTEX-13G51-0011-R5a-SM-5L3EB 3.6
GTEX-13JUV-0011-R5a-SM-5LZY5 3.6
GTEX-13OW5-0011-R5b-SM-5L3FR 3.6
GTEX-UTHO-0011-R5A-SM-3GIJD 3.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 3.4
GTEX-ZV68-0011-R5a-SM-4YCDW 3.4
GTEX-13CZV-0011-R5a-SM-5K7XA 3.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 3.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 3.2
GTEX-14BIM-0011-R5b-SM-5S2RM 3.2
GTEX-TSE9-0011-R5A-SM-3DB7J 3.1
GTEX-Z93S-0011-R5b-SM-4RGNI 2.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 2.4
GTEX-OXRN-0011-R5A-SM-2I5EF 2.2
GTEX-YJ89-0011-R5a-SM-4V6GM 2.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 1.8
GTEX-T6MN-0011-R5A-SM-32QPD 1.8
GTEX-12WSA-0011-R5b-SM-5GU5I 1.2
GTEX-139TT-0011-R5b-SM-5K7W8 1.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

43.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 43.6
FF:10379-105H1 89 years, female 47.3
FF:10164-103B2 76 years, female 39.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.