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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:60.3RPKM
FANTOM5:139.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA035873

 

Antibody HPA035874

 

Antibody CAB009794

 

Glial cells

Low   Not detected   Not detected  

Neuronal cells

Not detected   Not detected   Not detected  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

60.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 60.3
Samples: 117

Max RPKM: 88.9
Min RPKM: 30.3
Std RPKM: 11.6
Median RPKM: 61.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 88.9
GTEX-11H98-0011-R5b-SM-57WCF 82.6
GTEX-QMR6-0011-R5A-SM-32PKT 82.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 82.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 80.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 78.5
GTEX-13NYS-0011-R5a-SM-5MR4D 77.6
GTEX-WWYW-0011-R5A-SM-3NB3E 77.3
GTEX-13X6K-0011-R5b-SM-5PNUE 77.0
GTEX-N7MT-0011-R5a-SM-2I3G6 76.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 75.3
GTEX-13X6I-0011-R5a-SM-5PNWW 75.1
GTEX-QVJO-0011-R5A-SM-2S1QM 73.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 73.1
GTEX-XMD1-0011-R5A-SM-4AT47 72.7
GTEX-13FLV-0011-R5a-SM-5LZWT 72.3
GTEX-NL4W-0011-R5a-SM-2I3GD 71.9
GTEX-N7MS-0011-R5a-SM-2HMK8 71.7
GTEX-12WSA-0011-R5b-SM-5GU5I 71.6
GTEX-R55E-0011-R5A-SM-2TC5N 71.2
GTEX-13O3O-0011-R5b-SM-5KM44 71.1
GTEX-13JVG-0011-R5a-SM-5MR4O 71.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70.6
GTEX-13NYB-0011-R5a-SM-5MR45 70.4
GTEX-RU72-0011-R5A-SM-2TF6U 69.9
GTEX-131YS-0011-R5b-SM-5K7YB 69.8
GTEX-11GSP-0011-R5a-SM-57WBE 69.5
GTEX-14BIM-0011-R5b-SM-5S2RM 69.1
GTEX-WZTO-0011-R5B-SM-3NMC5 68.9
GTEX-13G51-0011-R5a-SM-5L3EB 68.1
GTEX-P44H-0011-R5A-SM-2XCEX 67.6
GTEX-X585-0011-R5A-SM-46MVI 67.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 67.4
GTEX-13JUV-0011-R5a-SM-5LZY5 67.3
GTEX-132Q8-0011-R5a-SM-5IJDM 67.1
GTEX-13FXS-0011-R5b-SM-5LZYE 67.0
GTEX-13OVH-0011-R5b-SM-5KM4L 67.0
GTEX-RVPV-0011-R5A-SM-2TF69 66.9
GTEX-13OW6-0011-R5a-SM-5O9BK 66.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 66.6
GTEX-T6MN-0011-R5A-SM-32QPD 66.5
GTEX-ZUA1-0011-R5b-SM-51MTG 66.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 66.3
GTEX-X4XX-0011-R5A-SM-46MWN 66.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 64.3
GTEX-S7SE-0011-R5A-SM-2XCDA 64.3
GTEX-13OW5-0011-R5b-SM-5L3FR 64.1
GTEX-12WSB-0011-R5b-SM-5GU67 63.9
GTEX-WVLH-0011-R5A-SM-3MJFW 63.7
GTEX-13FLW-0011-R5a-SM-5LZX6 63.6
GTEX-OHPN-0011-R5A-SM-2I5FF 63.6
GTEX-145MH-0011-R5a-SM-5P9JT 63.1
GTEX-X261-0011-R5A-SM-3NMB4 62.8
GTEX-13S7M-0011-R5b-SM-5P9HS 61.9
GTEX-XOTO-0011-R5A-SM-4B657 61.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 61.6
GTEX-13OVL-0011-R5b-SM-5L3FU 61.5
GTEX-UTHO-0011-R5A-SM-3GIJD 61.3
GTEX-13SLX-0011-R5a-SM-5O9BV 61.1
GTEX-13OW7-0011-R5b-SM-5O9DM 60.5
GTEX-144GO-0011-R5a-SM-5PNUR 60.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60.2
GTEX-1445S-0011-R5a-SM-5PNUS 60.1
GTEX-T5JC-0011-R5A-SM-32PLK 60.1
GTEX-145LS-0011-R5a-SM-5SI65 59.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 59.2
GTEX-PVOW-0011-R5A-SM-32PL7 58.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 58.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 58.0
GTEX-139T8-0011-R5b-SM-5J1MO 56.9
GTEX-WL46-0011-R5A-SM-3LK6V 56.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 56.8
GTEX-139TT-0011-R5b-SM-5K7W8 56.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 56.1
GTEX-12WSF-0011-R5a-SM-5HL8K 55.8
GTEX-13X6J-0011-R5b-SM-5PNWT 55.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 55.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 55.4
GTEX-12WSC-0011-R5b-SM-5CVNS 55.1
GTEX-1313W-0011-R5b-SM-5L3EP 54.0
GTEX-13VXU-0011-R5a-SM-5O9D7 53.7
GTEX-ZXG5-0011-R5b-SM-57WBN 53.7
GTEX-NL3H-0011-R5a-SM-2I3GB 53.5
GTEX-RVPU-0011-R5A-SM-2XCAD 53.5
GTEX-11NV4-0011-R5a-SM-5NQ88 53.4
GTEX-ZE7O-0011-R5a-SM-57WBO 53.1
GTEX-YFC4-0011-R5a-SM-4RGLR 53.0
GTEX-1399T-0011-R5b-SM-5IJDK 52.8
GTEX-11OF3-0011-R5a-SM-57WB4 52.7
GTEX-144GL-0011-R5b-SM-5PNUJ 52.6
GTEX-TSE9-0011-R5A-SM-3DB7J 52.6
GTEX-OXRN-0011-R5A-SM-2I5EF 52.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 52.3
GTEX-NPJ7-0011-R5a-SM-33HBK 51.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50.4
GTEX-14BIN-0011-R5b-SM-5SI78 50.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 49.4
GTEX-12WSD-0011-R5b-SM-5CVNG 48.4
GTEX-12ZZX-0011-R5a-SM-5HL89 47.9
GTEX-ZVT3-0011-R5a-SM-51MSI 47.5
GTEX-Z93S-0011-R5b-SM-4RGNI 47.4
GTEX-11UD1-0011-R5b-SM-5P9FP 46.5
GTEX-T2IS-0011-R5A-SM-32QP4 45.4
GTEX-ZV68-0011-R5a-SM-4YCDW 45.1
GTEX-13FHP-0011-R5b-SM-5LZY2 44.3
GTEX-11WQC-0011-R5a-SM-5BC74 44.1
GTEX-13112-0011-R5b-SM-5DUV8 43.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 43.5
GTEX-139TS-0011-R5b-SM-5J2MZ 42.4
GTEX-13CIG-0011-R5b-SM-5L3F2 41.9
GTEX-13CF2-0011-R5a-SM-5LZWS 40.6
GTEX-YJ89-0011-R5a-SM-4V6GM 38.9
GTEX-S7PM-0011-R5A-SM-3NM8G 37.8
GTEX-1477Z-0011-R5b-SM-5PNUO 37.6
GTEX-12WSH-0011-R5b-SM-5P9F3 34.8
GTEX-145MG-0011-R5b-SM-5S2VU 32.6
GTEX-13NZA-0011-R5b-SM-5KM4K 30.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

139.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 139.3
FF:10164-103B2 76 years, female 177.8
FF:10379-105H1 89 years, female 100.8

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