We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
RP5-1187M17.10
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:48.7RPKM
FANTOM5:139.9Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA031008

 

Antibody HPA031009

 

Glial cells

Not detected   Low  

Neuronal cells

Medium   Not detected  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

48.7

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 48.7
Samples: 117

Max RPKM: 98.4
Min RPKM: 8.1
Std RPKM: 22.9
Median RPKM: 50.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 98.4
GTEX-13G51-0011-R5a-SM-5L3EB 97.1
GTEX-14BIM-0011-R5b-SM-5S2RM 90.9
GTEX-131YS-0011-R5b-SM-5K7YB 87.5
GTEX-145MH-0011-R5a-SM-5P9JT 84.0
GTEX-QVJO-0011-R5A-SM-2S1QM 82.6
GTEX-1399T-0011-R5b-SM-5IJDK 82.5
GTEX-T5JC-0011-R5A-SM-32PLK 82.2
GTEX-1313W-0011-R5b-SM-5L3EP 81.2
GTEX-RU72-0011-R5A-SM-2TF6U 81.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 80.4
GTEX-13FXS-0011-R5b-SM-5LZYE 79.4
GTEX-11OF3-0011-R5a-SM-57WB4 79.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 79.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 78.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 77.5
GTEX-13X6K-0011-R5b-SM-5PNUE 76.8
GTEX-X585-0011-R5A-SM-46MVI 74.8
GTEX-14ABY-0011-R5b-SM-5SI7B 72.4
GTEX-12WSC-0011-R5b-SM-5CVNS 72.0
GTEX-12WSF-0011-R5a-SM-5HL8K 71.3
GTEX-N7MS-0011-R5a-SM-2HMK8 70.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 69.7
GTEX-145LS-0011-R5a-SM-5SI65 68.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 68.5
GTEX-T6MN-0011-R5A-SM-32QPD 67.8
GTEX-13X6J-0011-R5b-SM-5PNWT 67.6
GTEX-13VXU-0011-R5a-SM-5O9D7 66.5
GTEX-132Q8-0011-R5a-SM-5IJDM 66.3
GTEX-N7MT-0011-R5a-SM-2I3G6 66.2
GTEX-11GSP-0011-R5a-SM-57WBE 65.5
GTEX-R55E-0011-R5A-SM-2TC5N 65.2
GTEX-11H98-0011-R5b-SM-57WCF 65.0
GTEX-13SLX-0011-R5a-SM-5O9BV 65.0
GTEX-S7SE-0011-R5A-SM-2XCDA 63.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 62.7
GTEX-13JUV-0011-R5a-SM-5LZY5 62.4
GTEX-13S7M-0011-R5b-SM-5P9HS 62.4
GTEX-UTHO-0011-R5A-SM-3GIJD 62.4
GTEX-ZUA1-0011-R5b-SM-51MTG 62.3
GTEX-WVLH-0011-R5A-SM-3MJFW 60.7
GTEX-WZTO-0011-R5B-SM-3NMC5 60.3
GTEX-WL46-0011-R5A-SM-3LK6V 60.2
GTEX-WWYW-0011-R5A-SM-3NB3E 60.0
GTEX-13OVL-0011-R5b-SM-5L3FU 59.9
GTEX-OHPN-0011-R5A-SM-2I5FF 58.7
GTEX-13O3O-0011-R5b-SM-5KM44 58.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 57.9
GTEX-P44H-0011-R5A-SM-2XCEX 57.1
GTEX-Z93S-0011-R5b-SM-4RGNI 55.7
GTEX-13FLW-0011-R5a-SM-5LZX6 55.4
GTEX-13NYS-0011-R5a-SM-5MR4D 53.6
GTEX-13CZV-0011-R5a-SM-5K7XA 53.5
GTEX-11NV4-0011-R5a-SM-5NQ88 51.7
GTEX-139TT-0011-R5b-SM-5K7W8 51.7
GTEX-13OW6-0011-R5a-SM-5O9BK 51.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 51.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 50.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 50.8
GTEX-RVPV-0011-R5A-SM-2TF69 49.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 48.3
GTEX-13OW5-0011-R5b-SM-5L3FR 48.3
GTEX-13OW7-0011-R5b-SM-5O9DM 47.5
GTEX-T2IS-0011-R5A-SM-32QP4 46.5
GTEX-13OVH-0011-R5b-SM-5KM4L 46.2
GTEX-NL4W-0011-R5a-SM-2I3GD 46.0
GTEX-PVOW-0011-R5A-SM-32PL7 45.5
GTEX-13X6I-0011-R5a-SM-5PNWW 44.8
GTEX-RVPU-0011-R5A-SM-2XCAD 44.8
GTEX-ZE7O-0011-R5a-SM-57WBO 43.1
GTEX-TSE9-0011-R5A-SM-3DB7J 43.0
GTEX-12WSD-0011-R5b-SM-5CVNG 42.1
GTEX-ZXG5-0011-R5b-SM-57WBN 41.7
GTEX-13NYB-0011-R5a-SM-5MR45 40.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 38.6
GTEX-XMD1-0011-R5A-SM-4AT47 38.4
GTEX-12ZZX-0011-R5a-SM-5HL89 37.5
GTEX-12WSB-0011-R5b-SM-5GU67 36.6
GTEX-14BIN-0011-R5b-SM-5SI78 36.3
GTEX-YFC4-0011-R5a-SM-4RGLR 35.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 33.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 33.1
GTEX-XOTO-0011-R5A-SM-4B657 31.9
GTEX-13FLV-0011-R5a-SM-5LZWT 31.5
GTEX-13CIG-0011-R5b-SM-5L3F2 31.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 31.3
GTEX-OXRN-0011-R5A-SM-2I5EF 30.9
GTEX-X4XX-0011-R5A-SM-46MWN 29.7
GTEX-NL3H-0011-R5a-SM-2I3GB 27.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 26.7
GTEX-YJ89-0011-R5a-SM-4V6GM 26.6
GTEX-144GO-0011-R5a-SM-5PNUR 25.3
GTEX-QMR6-0011-R5A-SM-32PKT 24.9
GTEX-11WQC-0011-R5a-SM-5BC74 24.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 24.6
GTEX-X261-0011-R5A-SM-3NMB4 23.1
GTEX-144GL-0011-R5b-SM-5PNUJ 21.7
GTEX-13JVG-0011-R5a-SM-5MR4O 21.0
GTEX-ZV68-0011-R5a-SM-4YCDW 19.9
GTEX-13FHP-0011-R5b-SM-5LZY2 18.6
GTEX-ZVT3-0011-R5a-SM-51MSI 18.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 18.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 17.7
GTEX-13112-0011-R5b-SM-5DUV8 17.5
GTEX-12WSA-0011-R5b-SM-5GU5I 16.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 16.3
GTEX-139TS-0011-R5b-SM-5J2MZ 15.5
GTEX-1445S-0011-R5a-SM-5PNUS 15.2
GTEX-12WSH-0011-R5b-SM-5P9F3 15.0
GTEX-NPJ7-0011-R5a-SM-33HBK 15.0
GTEX-1477Z-0011-R5b-SM-5PNUO 13.6
GTEX-11UD1-0011-R5b-SM-5P9FP 13.4
GTEX-S7PM-0011-R5A-SM-3NM8G 12.6
GTEX-139T8-0011-R5b-SM-5J1MO 12.1
GTEX-13CF2-0011-R5a-SM-5LZWS 9.6
GTEX-145MG-0011-R5b-SM-5S2VU 9.0
GTEX-13NZA-0011-R5b-SM-5KM4K 8.1
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

139.9

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 139.9
FF:10379-105H1 89 years, female 164.2
FF:10164-103B2 76 years, female 115.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.