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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:87.8RPKM
FANTOM5:164.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA001527

 

Antibody HPA005692

 

Antibody CAB009538

 

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

Low   Low   Low  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

87.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 87.8
Samples: 117

Max RPKM: 436.9
Min RPKM: 16.8
Std RPKM: 66.7
Median RPKM: 70.8
GTEX-X4XX-0011-R5A-SM-46MWN 436.9
GTEX-WL46-0011-R5A-SM-3LK6V 426.6
GTEX-12WSA-0011-R5b-SM-5GU5I 372.7
GTEX-N7MS-0011-R5a-SM-2HMK8 210.0
GTEX-X585-0011-R5A-SM-46MVI 203.1
GTEX-11NV4-0011-R5a-SM-5NQ88 183.7
GTEX-WZTO-0011-R5B-SM-3NMC5 178.2
GTEX-QMR6-0011-R5A-SM-32PKT 175.1
GTEX-XOTO-0011-R5A-SM-4B657 166.4
GTEX-Z93S-0011-R5b-SM-4RGNI 163.7
GTEX-PVOW-0011-R5A-SM-32PL7 162.7
GTEX-WWYW-0011-R5A-SM-3NB3E 161.9
GTEX-13NYB-0011-R5a-SM-5MR45 150.8
GTEX-13OVH-0011-R5b-SM-5KM4L 149.4
GTEX-R55E-0011-R5A-SM-2TC5N 148.9
GTEX-13FLV-0011-R5a-SM-5LZWT 146.8
GTEX-13X6I-0011-R5a-SM-5PNWW 142.8
GTEX-12WSF-0011-R5a-SM-5HL8K 137.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 135.8
GTEX-RVPV-0011-R5A-SM-2TF69 130.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 124.8
GTEX-13X6K-0011-R5b-SM-5PNUE 118.7
GTEX-YFC4-0011-R5a-SM-4RGLR 115.4
GTEX-12WSB-0011-R5b-SM-5GU67 114.4
GTEX-13O3O-0011-R5b-SM-5KM44 110.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 105.4
GTEX-12WSH-0011-R5b-SM-5P9F3 102.4
GTEX-QVJO-0011-R5A-SM-2S1QM 95.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 95.7
GTEX-14BIN-0011-R5b-SM-5SI78 95.4
GTEX-ZUA1-0011-R5b-SM-51MTG 94.0
GTEX-144GL-0011-R5b-SM-5PNUJ 89.4
GTEX-ZVT3-0011-R5a-SM-51MSI 87.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 86.9
GTEX-NL4W-0011-R5a-SM-2I3GD 86.0
GTEX-145LS-0011-R5a-SM-5SI65 85.9
GTEX-11GSP-0011-R5a-SM-57WBE 85.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 85.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 84.6
GTEX-11WQC-0011-R5a-SM-5BC74 81.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 81.1
GTEX-13FLW-0011-R5a-SM-5LZX6 80.8
GTEX-13JVG-0011-R5a-SM-5MR4O 80.8
GTEX-13FHP-0011-R5b-SM-5LZY2 79.8
GTEX-ZXG5-0011-R5b-SM-57WBN 79.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 78.8
GTEX-NL3H-0011-R5a-SM-2I3GB 78.4
GTEX-WVLH-0011-R5A-SM-3MJFW 78.4
GTEX-1399T-0011-R5b-SM-5IJDK 77.2
GTEX-139TS-0011-R5b-SM-5J2MZ 77.2
GTEX-13OW6-0011-R5a-SM-5O9BK 76.2
GTEX-NPJ7-0011-R5a-SM-33HBK 76.1
GTEX-144GO-0011-R5a-SM-5PNUR 74.0
GTEX-XMD1-0011-R5A-SM-4AT47 73.7
GTEX-13FXS-0011-R5b-SM-5LZYE 72.6
GTEX-ZE7O-0011-R5a-SM-57WBO 72.5
GTEX-131YS-0011-R5b-SM-5K7YB 72.1
GTEX-13112-0011-R5b-SM-5DUV8 70.9
GTEX-13OVL-0011-R5b-SM-5L3FU 70.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 70.7
GTEX-13OW7-0011-R5b-SM-5O9DM 70.3
GTEX-12WSD-0011-R5b-SM-5CVNG 69.9
GTEX-13CF2-0011-R5a-SM-5LZWS 68.0
GTEX-132Q8-0011-R5a-SM-5IJDM 67.6
GTEX-13S7M-0011-R5b-SM-5P9HS 67.1
GTEX-T5JC-0011-R5A-SM-32PLK 66.4
GTEX-RVPU-0011-R5A-SM-2XCAD 65.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 64.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 63.4
GTEX-TSE9-0011-R5A-SM-3DB7J 62.4
GTEX-13VXU-0011-R5a-SM-5O9D7 62.3
GTEX-OHPN-0011-R5A-SM-2I5FF 62.2
GTEX-12ZZX-0011-R5a-SM-5HL89 60.8
GTEX-14ABY-0011-R5b-SM-5SI7B 60.6
GTEX-12WSC-0011-R5b-SM-5CVNS 59.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 59.5
GTEX-UTHO-0011-R5A-SM-3GIJD 59.1
GTEX-S7SE-0011-R5A-SM-2XCDA 58.7
GTEX-1445S-0011-R5a-SM-5PNUS 58.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 57.9
GTEX-1313W-0011-R5b-SM-5L3EP 57.0
GTEX-13SLX-0011-R5a-SM-5O9BV 56.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 55.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 54.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 53.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 52.6
GTEX-OXRN-0011-R5A-SM-2I5EF 52.4
GTEX-T6MN-0011-R5A-SM-32QPD 52.1
GTEX-N7MT-0011-R5a-SM-2I3G6 51.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 51.6
GTEX-145MH-0011-R5a-SM-5P9JT 51.3
GTEX-13OW5-0011-R5b-SM-5L3FR 50.4
GTEX-P44H-0011-R5A-SM-2XCEX 50.1
GTEX-13G51-0011-R5a-SM-5L3EB 49.5
GTEX-11OF3-0011-R5a-SM-57WB4 49.2
GTEX-11H98-0011-R5b-SM-57WCF 48.9
GTEX-13X6J-0011-R5b-SM-5PNWT 46.7
GTEX-13JUV-0011-R5a-SM-5LZY5 43.6
GTEX-14BIM-0011-R5b-SM-5S2RM 42.7
GTEX-RU72-0011-R5A-SM-2TF6U 41.8
GTEX-13NYS-0011-R5a-SM-5MR4D 40.2
GTEX-13CZV-0011-R5a-SM-5K7XA 38.9
GTEX-ZV68-0011-R5a-SM-4YCDW 38.5
GTEX-139TT-0011-R5b-SM-5K7W8 38.1
GTEX-X261-0011-R5A-SM-3NMB4 38.0
GTEX-11UD1-0011-R5b-SM-5P9FP 36.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 35.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 35.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 33.9
GTEX-YJ89-0011-R5a-SM-4V6GM 32.5
GTEX-1477Z-0011-R5b-SM-5PNUO 31.0
GTEX-S7PM-0011-R5A-SM-3NM8G 30.5
GTEX-139T8-0011-R5b-SM-5J1MO 30.1
GTEX-T2IS-0011-R5A-SM-32QP4 29.8
GTEX-13NZA-0011-R5b-SM-5KM4K 18.4
GTEX-13CIG-0011-R5b-SM-5L3F2 18.3
GTEX-145MG-0011-R5b-SM-5S2VU 16.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

164.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 164.2
FF:10379-105H1 89 years, female 183.3
FF:10164-103B2 76 years, female 145.0

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