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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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SLC17A6
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA039226

 

Antibody CAB037130

 

Provider

Atlas Antibodies
Sigma-Aldrich
  SIGMA
 

Product name

HPA039226   V2514  

Host species

Rabbit   Rabbit  

Clonality

pAb   pAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

   

Released in version

12   7  

References

   

VALIDATION SUMMARY

 
 

Antibody HPA039226

 

Antibody CAB037130

 
Immunohistochemistry


Validated
  Supported  
Western blot

Uncertain   Uncertain  
Protein array

Approved    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA039226

 

Antibody CAB037130

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
   

 

 

   

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.    
 

Standard validation

Supported   Supported  

   

Figure description

Immunohistochemical staining of human bronchus shows strong membranous positivity in respiratory epithelial cells.   Immunohistochemical staining of human lateral ventricle shows moderate cytoplasmic positivity in neuronal cells.  

Expression

RNA: detected in 1 tissues
Protein: detected in 28 cell types
  RNA: detected in 1 tissues
Protein: detected in 17 cell types
 

Retrieval

HIER pH6   HIER pH6  

Antibody dilution

1:2200   1:2000  

Literature conformity

Partly consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly consistent with RNA expression data.   Mainly consistent with RNA expression data.  
 

Standard validation

Supported    

   

Figure description

Wide expression in neurons.    

WESTERN BLOT

 
 

Antibody HPA039226

 

Antibody CAB037130

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
Current setup is not applicable due to low RNA count.
  Uncertain

Analysis performed using a standard panel of samples.
Current setup is not applicable due to low RNA count.
 

   

Figure description

   

Target mass (kDa)

64.4   64.4  

Antibody dilution

1:250   1:500  

PROTEIN ARRAY

 
 

Antibody HPA039226

 

Antibody CAB037130

 

Standard validation

Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
   

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:6000    

ANTIGEN INFORMATION

 
 

Antibody HPA039226

 

Antibody CAB037130

 

Antigen

Recombinant protein fragment   Synthetic peptide  

Length (aa)

66    

Antigen sequence

CGFIHEDELDEETGDITQNYINYGTTKSYGATTQANGGWPSGWEKKEEFV
QGEVQDSHSYKDRVDY
   

Matching transcripts

SLC17A6-001 - ENSP00000263160 [100%]
   

Other gene match

   
ANTIGEN VIEW
SLC17A6-001
 

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