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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:34.7RPKM
FANTOM5:17.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA051075

 

Antibody CAB005223

 

Antibody CAB075755

 

Antibody CAB075756

 

Glial cells

Low   High   Low   Not detected  

Neuronal cells

High   High   High   High  
       
       
       

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

34.7

GTEx sample id

RPKM

30.735.139.020.049.505101520253035404550
 
30.735.139.020.049.505101520253035404550

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 34.7
Samples: 117

Max RPKM: 53.3
Min RPKM: 15.4
Std RPKM: 7.3
Median RPKM: 35.1
GTEX-12WSA-0011-R5b-SM-5GU5I 53.3
GTEX-UTHO-0011-R5A-SM-3GIJD 51.9
GTEX-132Q8-0011-R5a-SM-5IJDM 49.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 48.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 47.0
GTEX-XMD1-0011-R5A-SM-4AT47 46.5
GTEX-T2IS-0011-R5A-SM-32QP4 46.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 45.7
GTEX-WWYW-0011-R5A-SM-3NB3E 45.4
GTEX-X585-0011-R5A-SM-46MVI 44.5
GTEX-P44H-0011-R5A-SM-2XCEX 44.3
GTEX-13X6I-0011-R5a-SM-5PNWW 44.1
GTEX-T6MN-0011-R5A-SM-32QPD 43.6
GTEX-12WSB-0011-R5b-SM-5GU67 43.5
GTEX-12WSF-0011-R5a-SM-5HL8K 43.1
GTEX-X4XX-0011-R5A-SM-46MWN 43.1
GTEX-13NYS-0011-R5a-SM-5MR4D 42.8
GTEX-139TT-0011-R5b-SM-5K7W8 42.5
GTEX-131YS-0011-R5b-SM-5K7YB 41.8
GTEX-PVOW-0011-R5A-SM-32PL7 41.8
GTEX-11H98-0011-R5b-SM-57WCF 41.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 41.6
GTEX-QVJO-0011-R5A-SM-2S1QM 41.6
GTEX-12WSC-0011-R5b-SM-5CVNS 40.9
GTEX-QMR6-0011-R5A-SM-32PKT 40.0
GTEX-N7MT-0011-R5a-SM-2I3G6 39.9
GTEX-1399T-0011-R5b-SM-5IJDK 39.4
GTEX-13G51-0011-R5a-SM-5L3EB 39.3
GTEX-145LS-0011-R5a-SM-5SI65 39.1
GTEX-TSE9-0011-R5A-SM-3DB7J 39.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 38.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 38.6
GTEX-144GO-0011-R5a-SM-5PNUR 38.6
GTEX-11OF3-0011-R5a-SM-57WB4 38.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 38.4
GTEX-R55E-0011-R5A-SM-2TC5N 38.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 38.1
GTEX-RU72-0011-R5A-SM-2TF6U 38.0
GTEX-NL4W-0011-R5a-SM-2I3GD 37.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 37.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 37.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 37.2
GTEX-13JVG-0011-R5a-SM-5MR4O 37.1
GTEX-1313W-0011-R5b-SM-5L3EP 37.0
GTEX-N7MS-0011-R5a-SM-2HMK8 37.0
GTEX-ZUA1-0011-R5b-SM-51MTG 37.0
GTEX-13OW6-0011-R5a-SM-5O9BK 36.9
GTEX-NPJ7-0011-R5a-SM-33HBK 36.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 36.6
GTEX-11GSP-0011-R5a-SM-57WBE 36.5
GTEX-WZTO-0011-R5B-SM-3NMC5 36.4
GTEX-NL3H-0011-R5a-SM-2I3GB 36.3
GTEX-S7SE-0011-R5A-SM-2XCDA 36.3
GTEX-T5JC-0011-R5A-SM-32PLK 36.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 35.9
GTEX-14BIM-0011-R5b-SM-5S2RM 35.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 35.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 35.3
GTEX-WVLH-0011-R5A-SM-3MJFW 35.1
GTEX-YFC4-0011-R5a-SM-4RGLR 35.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 34.9
GTEX-13JUV-0011-R5a-SM-5LZY5 34.8
GTEX-13X6K-0011-R5b-SM-5PNUE 34.8
GTEX-14ABY-0011-R5b-SM-5SI7B 34.4
GTEX-X261-0011-R5A-SM-3NMB4 34.3
GTEX-ZE7O-0011-R5a-SM-57WBO 33.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 32.9
GTEX-Z93S-0011-R5b-SM-4RGNI 32.8
GTEX-13VXU-0011-R5a-SM-5O9D7 32.7
GTEX-13X6J-0011-R5b-SM-5PNWT 32.6
GTEX-RVPU-0011-R5A-SM-2XCAD 32.5
GTEX-WL46-0011-R5A-SM-3LK6V 32.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 32.5
GTEX-13SLX-0011-R5a-SM-5O9BV 32.3
GTEX-13O3O-0011-R5b-SM-5KM44 32.1
GTEX-145MH-0011-R5a-SM-5P9JT 32.1
GTEX-11NV4-0011-R5a-SM-5NQ88 31.8
GTEX-12WSD-0011-R5b-SM-5CVNG 31.8
GTEX-1445S-0011-R5a-SM-5PNUS 31.6
GTEX-13CZV-0011-R5a-SM-5K7XA 31.5
GTEX-13FLV-0011-R5a-SM-5LZWT 31.4
GTEX-ZXG5-0011-R5b-SM-57WBN 31.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 31.1
GTEX-11WQC-0011-R5a-SM-5BC74 31.0
GTEX-13CIG-0011-R5b-SM-5L3F2 30.7
GTEX-13FXS-0011-R5b-SM-5LZYE 30.7
GTEX-13OW5-0011-R5b-SM-5L3FR 30.7
GTEX-RVPV-0011-R5A-SM-2TF69 30.7
GTEX-139TS-0011-R5b-SM-5J2MZ 30.6
GTEX-13NYB-0011-R5a-SM-5MR45 30.5
GTEX-13OW7-0011-R5b-SM-5O9DM 30.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 30.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 29.7
GTEX-ZV68-0011-R5a-SM-4YCDW 29.3
GTEX-13OVL-0011-R5b-SM-5L3FU 29.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 28.6
GTEX-13OVH-0011-R5b-SM-5KM4L 28.5
GTEX-12ZZX-0011-R5a-SM-5HL89 27.8
GTEX-14BIN-0011-R5b-SM-5SI78 26.4
GTEX-13S7M-0011-R5b-SM-5P9HS 26.1
GTEX-XOTO-0011-R5A-SM-4B657 26.1
GTEX-13FLW-0011-R5a-SM-5LZX6 26.0
GTEX-12WSH-0011-R5b-SM-5P9F3 25.6
GTEX-OXRN-0011-R5A-SM-2I5EF 25.3
GTEX-ZVT3-0011-R5a-SM-51MSI 25.3
GTEX-139T8-0011-R5b-SM-5J1MO 25.1
GTEX-OHPN-0011-R5A-SM-2I5FF 24.8
GTEX-11UD1-0011-R5b-SM-5P9FP 24.6
GTEX-144GL-0011-R5b-SM-5PNUJ 23.1
GTEX-S7PM-0011-R5A-SM-3NM8G 21.9
GTEX-1477Z-0011-R5b-SM-5PNUO 21.2
GTEX-13112-0011-R5b-SM-5DUV8 20.9
GTEX-13CF2-0011-R5a-SM-5LZWS 20.8
GTEX-YJ89-0011-R5a-SM-4V6GM 20.4
GTEX-13FHP-0011-R5b-SM-5LZY2 20.0
GTEX-145MG-0011-R5b-SM-5S2VU 17.7
GTEX-13NZA-0011-R5b-SM-5KM4K 15.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

17.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 17.0
FF:10164-103B2 76 years, female 18.9
FF:10379-105H1 89 years, female 15.2

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