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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Cell Signaling Technology, Inc
  NCI-CPTC
 

Product name

HPA021616   3145   CPTC-Ezrin-1  

Host species

Rabbit   Rabbit   Mouse  

Clonality

pAb   pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Not known   Protein A/G  

Other gene match

     

Released in version

5   2   9  

References

2      

VALIDATION SUMMARY

 
 

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 
Immunocytochemistry

Supported   Supported   Supported  
Immunohistochemistry


Validated
 

Validated
 

Validated
 
Western blot

Supported   Uncertain   Supported  
Protein array

Supported      

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunofluorescent staining of human cell line A-431 shows localization to plasma membrane.   Immunofluorescent staining of human cell line U-251 MG shows localization to plasma membrane.   Immunofluorescent staining of human cell line U-2 OS shows localization to plasma membrane.  

Antibody dilution

1:112   1:50   1:2000  

Literature conformity

The subcellular location is supported by literature.   The subcellular location is supported by literature.   The subcellular location is supported by literature.  

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

 

 

 
 

 

 
 

 

 

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 43 cell lines.  
 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human stomach (upper) shows strong cytoplasmic positivity in parietal cells.   Immunohistochemical staining of human stomach shows strong cytoplasmic positivity in parietal cells.   Immunohistochemical staining of human stomach (upper) shows distinct cytoplasmic positivity in parietal cells.  

Expression

RNA: detected in 37 tissues
Protein: detected in 59 cell types
  RNA: detected in 37 tissues
Protein: detected in 66 cell types
  RNA: detected in 37 tissues
Protein: detected in 55 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:2500   1:200   1:40000  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Uncertain

Analysis performed using a standard panel of samples.
Single band differing more than +/-20% from predicted size in kDa and not supported by experimental and/or bioinformatic data.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

     

Figure description

Lane 1: Marker [kDa] 230, 130, 95, 72, 56, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 230, 110, 82, 49.3, 32.2, 25.5, 17.6
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

69.4   69.4   69.4  

Antibody dilution

1:250   1:500   1:500  

PROTEIN ARRAY

 
 

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
     

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.      

Antibody dilution

1:3000      

ANTIGEN INFORMATION

 
 

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 

Antigen

Recombinant protein fragment   Synthetic peptide   Recombinant protein  

Length (aa)

123      

Antigen sequence

REEKHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTK
KAERELSEQIQRALQLEEERKRAQEEAERLEADRMAALRAKEELERQAVD
QIKSQEQLAAELAEYTAKIALLE
     

Matching transcripts

EZR-001 - ENSP00000356042 [100%]
EZR-002 - ENSP00000338934 [100%]
EZR-201 - ENSP00000376016 [100%]
     

Other gene match

     
ANTIGEN VIEW
EZR-001
EZR-002
EZR-201

RELEVANT PUBLICATIONS

 
 

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 

1.

Reduced expression of ezrin in urothelial bladder cancer signifies more advanced tumours and an impaired survival: validatory study of two independent patient cohorts
Andersson G et al
BMC Urol 2014;14:36
Application: IHC
     

2.

Incident urothelial cancer in the Malmö Diet and Cancer Study: cohort characteristics and further validation of ezrin as a prognostic biomarker
Wennersten C et al
Diagn Pathol 2014;9:189
     
 

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