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Gene name

Class

Subclass

Chromosome

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Reliability

Reliability

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Method

Validation

Method

Validation

Method

Validation

Location

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Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA003714

 

Antibody HPA026321

 

Antibody CAB004236

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  Santa Cruz Biotechnology
 

Product name

HPA003714   HPA026321   sc-28386  

Host species

Rabbit   Rabbit   Mouse  

Clonality

pAb   pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

     

Released in version

5   5   2  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA003714

 

Antibody HPA026321

 

Antibody CAB004236

 
Immunocytochemistry

  Supported    
Immunohistochemistry

Approved   Approved   Approved  
Western blot

Supported   Supported   Uncertain  
Protein array

Supported   Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA003714

 

Antibody HPA026321

 

Antibody CAB004236

 

Standard validation

  Supported    

     

Figure description

  Immunofluorescent staining of human cell line U-251 MG shows localization to nucleoplasm.    

Antibody dilution

  1:7    

Literature conformity

  The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA003714

 

Antibody HPA026321

 

Antibody CAB004236

 

Standard validation

Approved   Approved   Approved  

     

Figure description

Immunohistochemical staining of human testis shows cytoplasmic positivity in cells in seminiferous ducts and Leydig cells.   Immunohistochemical staining of human testis shows strong cytoplasmic positivity in cells in seminiferous ducts and Leydig cells.   Immunohistochemical staining of human testis shows strong cytoplasmic positivity in cells in seminiferous ducts.  

Expression

RNA: detected in 37 tissues
Protein: detected in 33 cell types
  RNA: detected in 37 tissues
Protein: detected in 54 cell types
  RNA: detected in 37 tissues
Protein: detected in 61 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:30   1:15   1:25  

Literature conformity

Partly consistent with extensive gene/protein characterization data.   Partly consistent with extensive gene/protein characterization data.   Partly consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly not consistent with RNA expression data.   Mainly not consistent with RNA expression data.   Mainly not consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA003714

 

Antibody HPA026321

 

Antibody CAB004236

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Supported

Band of predicted size in kDa (+/-20%) with additional bands present.
  Uncertain

Analysis performed using a standard panel of samples.
Single band differing more than +/-20% from predicted size in kDa and not supported by experimental and/or bioinformatic data.
 

     

Figure description

Lane 1: Marker [kDa] 230, 110, 82, 49.3, 32.2, 25.5, 17.6
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: Negative control (vector only transfected HEK293T lysate)
Lane 3: Over-expression Lysate (Co-expressed with a C-terminal myc-DDK tag (~3.1 kDa) in mammalian HEK293T cells, LY401822)
  Lane 1: Marker [kDa] 230, 110, 82, 49.3, 32.2, 25.5, 17.6
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

131.4   131.4   131.4, 30.3, 23.4, 19.3, 18.9, 18.2, 15.9, 8.7, 5.6  

Antibody dilution

1:250   1:250   1:500  

PROTEIN ARRAY

 
 

Antibody HPA003714

 

Antibody HPA026321

 

Antibody CAB004236

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:2000   1:500    

ANTIGEN INFORMATION

 
 

Antibody HPA003714

 

Antibody HPA026321

 

Antibody CAB004236

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Recombinant protein  

Length (aa)

130   136    

Antigen sequence

SAQASVSCALEALEPFWEVLVRSTETVERDNMEEDNVEESEEEGPWEPPV
LPILTWPVLQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELG
LAGRCLTLTPRPATEAELLTCHSAEYVGHL
 
QVHRRYWRSLRVMKVEDREGPSSSKLVTKKAPQPAKPRLAERMTTREKKV
LEAGMGKVTSASFGEESTPGQTNSETAVVALTQDQPSEAATGGATLAQTI
SEAAIGGAMLGQTTSEEAVGGATPDQTTSEETVGGA
   

Matching transcripts

HDAC6-001 - ENSP00000334061 [100%]
HDAC6-017 - ENSP00000365804 [100%]
  HDAC6-001 - ENSP00000334061 [100%]
HDAC6-017 - ENSP00000365804 [100%]
   

Other gene match

     
ANTIGEN VIEW
HDAC6-001
HDAC6-017
 

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.