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SNU13

GENERAL INFORMATION

Gene name

 SNU13

Gene description

 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)

Protein class

 Predicted intracellular proteins
Ribosomal proteins

Predicted localization

 Intracellular

Number of transcripts

 4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

 Evidence at protein level

Protein expression

 Nucleolar and cytoplasmic expression in several tissues.

DATA RELIABILITY

Data reliability
description

 Antibody staining mainly not consistent with RNA expression data.

Reliability score

 Uncertain based on 1 antibody.
HPA029199
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Adrenal gland

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

 SNU13 (HGNC Symbol)

Synonyms

 15.5K, FA-1, NHP2L1, SNRNP15-5, SPAG12, SSFA1

Description

 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) (HGNC Symbol)

Entrez gene summary

 Originally named because of its sequence similarity to the Saccharomyces cerevisiae NHP2 (non-histone protein 2), this protein appears to be a highly conserved nuclear protein that is a component of the [U4/U6.U5] tri-snRNP. It binds to the 5' stem-loop of U4 snRNA. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

Chromosome

 22

Cytoband

 q13.2

Chromosome location (bp)

 41673930 - 41690504

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000100138 (version 83.38)

Entrez gene

 4809

UniProt

 P55769 (UniProt - Evidence at protein level)

neXtProt

 NX_P55769

Antibodypedia

 SNU13 antibodies

PROTEIN BROWSER
SNU13-001
SNU13-002
SNU13-003
SNU13-008

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
SNU13-001
ENSP00000347401
ENST00000355257
P55769 [Direct mapping]
NHP2-like protein 1 NHP2-like protein 1, N-terminally processed
Q6FHM6 [Target identity:100%; Query identity:100%]
NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae); NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae), isoform CRA_a; NHP2L1 protein; cDNA, FLJ92061, Homo sapiens NHP2 non-histone chromosome protein 2-like 1 (S.cerevisiae) (NHP2L1), mRNA
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Ribosomal proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005681 [spliceosomal complex]
GO:0005730 [nucleolus]
GO:0008380 [RNA splicing]
GO:0010467 [gene expression]
GO:0030515 [snoRNA binding]
GO:0030529 [ribonucleoprotein complex]
GO:0030621 [U4 snRNA binding]
GO:0030622 [U4atac snRNA binding]
GO:0031428 [box C/D snoRNP complex]
GO:0034511 [U3 snoRNA binding]
GO:0034512 [box C/D snoRNA binding]
GO:0042254 [ribosome biogenesis]
GO:0043234 [protein complex]
GO:0044822 [poly(A) RNA binding]
Show all
 128 aa
14.2 kDa 		No 0
SNU13-002
ENSP00000383949
ENST00000401959
P55769 [Direct mapping]
NHP2-like protein 1 NHP2-like protein 1, N-terminally processed
Q6FHM6 [Target identity:100%; Query identity:100%]
NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae); NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae), isoform CRA_a; NHP2L1 protein; cDNA, FLJ92061, Homo sapiens NHP2 non-histone chromosome protein 2-like 1 (S.cerevisiae) (NHP2L1), mRNA
Show all
Ribosomal proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005681 [spliceosomal complex]
GO:0005730 [nucleolus]
GO:0008380 [RNA splicing]
GO:0010467 [gene expression]
GO:0030515 [snoRNA binding]
GO:0030529 [ribonucleoprotein complex]
GO:0030621 [U4 snRNA binding]
GO:0030622 [U4atac snRNA binding]
GO:0031428 [box C/D snoRNP complex]
GO:0034511 [U3 snoRNA binding]
GO:0034512 [box C/D snoRNA binding]
GO:0042254 [ribosome biogenesis]
GO:0043234 [protein complex]
GO:0044822 [poly(A) RNA binding]
Show all
 128 aa
14.2 kDa 		No 0
SNU13-003
ENSP00000215956
ENST00000215956
P55769 [Direct mapping]
NHP2-like protein 1 NHP2-like protein 1, N-terminally processed
Q6FHM6 [Target identity:100%; Query identity:100%]
NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae); NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae), isoform CRA_a; NHP2L1 protein; cDNA, FLJ92061, Homo sapiens NHP2 non-histone chromosome protein 2-like 1 (S.cerevisiae) (NHP2L1), mRNA
Show all
Ribosomal proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000398 [mRNA splicing, via spliceosome]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005681 [spliceosomal complex]
GO:0005730 [nucleolus]
GO:0008380 [RNA splicing]
GO:0010467 [gene expression]
GO:0030515 [snoRNA binding]
GO:0030529 [ribonucleoprotein complex]
GO:0030621 [U4 snRNA binding]
GO:0030622 [U4atac snRNA binding]
GO:0031428 [box C/D snoRNP complex]
GO:0034511 [U3 snoRNA binding]
GO:0034512 [box C/D snoRNA binding]
GO:0042254 [ribosome biogenesis]
GO:0043234 [protein complex]
GO:0044822 [poly(A) RNA binding]
Show all
 128 aa
14.2 kDa 		No 0
SNU13-008
ENSP00000383989
ENST00000402458
B1AHD1 [Direct mapping]
NHP2-like protein 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005730 [nucleolus]
GO:0030529 [ribonucleoprotein complex]
GO:0042254 [ribosome biogenesis]
Show all
 132 aa
14.6 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.