We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ACO2
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:35.0TPM
GTEx:25.4RPKM
FANTOM5:63.7Tags Per Million

BREAST - Annotated protein expression

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:High
Myoepithelial cells:High
 

Antibody staining

Antibody HPA001097

 

Adipocytes

Not detected  

Glandular cells

High  

Myoepithelial cells

High  
 
 

BREAST - HPA RNA-seq

Average TPM

35.0

overview Female, age 52
Sample 1
TPM: 38.5
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80
Sample 2
TPM: 38.4
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47
Sample 3
TPM: 37.9
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38
Sample 4
TPM: 25.0
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seq

Average RPKM

25.4

GTEx sample id

RPKM

 

Breast - Mammary Tissue

Breast - Mammary Tissue
RPKM: 25.4
Samples: 214

Max RPKM: 77.9
Min RPKM: 11.4
Std RPKM: 10.8
Median RPKM: 21.1
GTEX-11P82-1326-SM-5HL62 77.9
GTEX-117YX-1426-SM-5H12H 70.2
GTEX-YB5K-1626-SM-5IFIN 70.0
GTEX-ZQG8-0726-SM-5P9H9 63.5
GTEX-WY7C-2726-SM-3NB3P 61.2
GTEX-ZDYS-1126-SM-5K7UB 52.7
GTEX-13CF3-2126-SM-5IFJP 52.0
GTEX-11ZTT-2326-SM-5EQLG 49.1
GTEX-YB5E-1726-SM-5IFJ3 49.1
GTEX-YEC3-1026-SM-5IFI5 48.0
GTEX-ZPIC-1126-SM-5BC7F 48.0
GTEX-XQ8I-2426-SM-4WAXY 45.5
GTEX-ZQUD-1926-SM-51MSA 44.8
GTEX-13FTW-1426-SM-5LZWZ 44.2
GTEX-145ME-1526-SM-5Q5F2 43.7
GTEX-R55D-0826-SM-48FEA 43.5
GTEX-PSDG-1626-SM-48TCQ 43.3
GTEX-ZYWO-2326-SM-5GZY4 41.2
GTEX-XGQ4-0926-SM-4AT4U 40.9
GTEX-1211K-1926-SM-5EQLB 40.6
GTEX-ZT9W-2026-SM-51MRA 40.2
GTEX-13FTX-1126-SM-5N9EN 39.6
GTEX-T6MO-0326-SM-32QOK 38.8
GTEX-ZZ64-1226-SM-5E43R 38.6
GTEX-XV7Q-2326-SM-4BRVZ 38.2
GTEX-SE5C-2126-SM-4BRUJ 37.9
GTEX-ZDXO-0126-SM-5S2ND 37.9
GTEX-144GM-0926-SM-5O994 37.4
GTEX-14E6E-1326-SM-5S2NR 36.9
GTEX-Y114-2026-SM-4TT7L 36.9
GTEX-REY6-2426-SM-48FF5 36.4
GTEX-S4Q7-1126-SM-4AD6R 36.4
GTEX-Y9LG-1426-SM-5IFJZ 36.2
GTEX-139T6-1626-SM-5PNYZ 36.0
GTEX-11TT1-2126-SM-5GU5Y 35.0
GTEX-RUSQ-2026-SM-4GIAK 35.0
GTEX-ZLFU-2126-SM-4WWEV 34.9
GTEX-Y5V6-2126-SM-4WWFX 34.0
GTEX-11I78-2226-SM-5PNYA 33.7
GTEX-S4UY-0726-SM-4AD6X 33.7
GTEX-R53T-1526-SM-48FEK 33.4
GTEX-ZV6S-1826-SM-5NQ8D 33.3
GTEX-1399U-1826-SM-5PNZ1 33.2
GTEX-T5JW-2026-SM-4DM63 32.9
GTEX-12KS4-0126-SM-5Q5A5 32.8
GTEX-Y8E4-1626-SM-5S2MW 32.5
GTEX-TKQ1-0226-SM-33HB5 31.9
GTEX-145MO-0826-SM-5NQBL 31.0
GTEX-X4XY-0926-SM-4E3JD 31.0
GTEX-12BJ1-1826-SM-5HL9N 30.9
GTEX-YFCO-1826-SM-4W1YH 30.7
GTEX-QMRM-1626-SM-4R1KV 30.3
GTEX-11DXZ-1926-SM-5GZZL 30.1
GTEX-11ZUS-0826-SM-5FQUY 30.0
GTEX-13O61-1826-SM-5KM4I 29.8
GTEX-ZA64-1526-SM-5CVMD 29.4
GTEX-11TUW-1826-SM-5BC5D 29.1
GTEX-QEL4-2126-SM-447AE 28.7
GTEX-XUW1-2326-SM-4BOO5 28.0
GTEX-133LE-1726-SM-5K7VQ 27.7
GTEX-13W3W-1226-SM-5LU4H 27.7
GTEX-WXYG-2226-SM-4E3IM 27.4
GTEX-11EQ9-1826-SM-5Q5AJ 27.1
GTEX-XMK1-1126-SM-4IHJ8 27.0
GTEX-ZDTT-2126-SM-5S2OJ 26.2
GTEX-XQ3S-1326-SM-4BOPQ 26.1
GTEX-12WSN-1326-SM-5GCNT 25.6
GTEX-13FHO-0826-SM-5L3E8 25.5
GTEX-XUJ4-1926-SM-4BOOV 25.3
GTEX-146FH-0826-SM-5SI8T 25.2
GTEX-U8XE-0826-SM-4E3J1 25.2
GTEX-Y3IK-2326-SM-4WWDT 25.0
GTEX-ZYT6-0126-SM-5E45J 24.9
GTEX-WFON-1826-SM-3GILG 24.8
GTEX-XYKS-1326-SM-4BRUN 24.8
GTEX-132AR-0826-SM-5EGK6 24.7
GTEX-U412-1826-SM-4DXTJ 24.6
GTEX-Y5V5-2126-SM-4WWFO 24.6
GTEX-13NZ9-1026-SM-5MR5K 24.5
GTEX-11ONC-2126-SM-5HL6E 24.4
GTEX-ZLV1-1426-SM-4WWES 24.3
GTEX-ZVT4-1026-SM-57WC4 24.2
GTEX-QVJO-1826-SM-447C9 24.1
GTEX-145MN-1926-SM-5SIAI 23.8
GTEX-13NZB-2126-SM-5MR4Y 23.7
GTEX-11P81-1926-SM-5BC53 23.6
GTEX-YJ8O-2226-SM-5IFHW 23.6
GTEX-UJHI-1426-SM-3DB9C 23.5
GTEX-QDT8-0626-SM-48TYW 23.4
GTEX-12WSK-2226-SM-5GCO5 23.2
GTEX-ZAB4-2526-SM-5HL8M 23.2
GTEX-TKQ2-1826-SM-33HB2 23.1
GTEX-TML8-1226-SM-32QON 23.1
GTEX-U3ZH-1426-SM-4DXSR 23.0
GTEX-13NZ8-0126-SM-5IJCT 22.8
GTEX-13113-1726-SM-5GCOO 22.7
GTEX-RWS6-1926-SM-47JXY 22.2
GTEX-Y8LW-1626-SM-5IFHX 22.1
GTEX-S32W-2026-SM-4AD6E 21.9
GTEX-13OW5-2226-SM-5L3HC 21.8
GTEX-QEG5-0726-SM-4R1JQ 21.7
GTEX-U3ZN-1926-SM-4DXSG 21.7
GTEX-11O72-2126-SM-5N9FO 21.5
GTEX-UPK5-2326-SM-3P5Z8 21.4
GTEX-11GSO-1926-SM-5A5K3 21.2
GTEX-ZZPU-0626-SM-5E43T 21.2
GTEX-11NSD-0926-SM-5N9DR 21.1
GTEX-131YS-0626-SM-5EGKL 21.1
GTEX-ZY6K-1626-SM-5GZWV 21.1
GTEX-11GS4-2126-SM-5A5KR 21.0
GTEX-11P7K-0726-SM-5EGKX 21.0
GTEX-14ABY-2126-SM-5QGQZ 21.0
GTEX-12WSM-1726-SM-5BC6J 20.9
GTEX-X261-0626-SM-3NMD9 20.8
GTEX-1122O-1226-SM-5H113 20.7
GTEX-139T8-0826-SM-5L3DE 20.6
GTEX-RU72-0626-SM-46MUI 20.6
GTEX-13CF2-2026-SM-5K7VI 20.5
GTEX-13N1W-0626-SM-5MR4U 20.5
GTEX-R3RS-0626-SM-48FE1 20.5
GTEX-S33H-0326-SM-4AD6N 20.5
GTEX-T2IS-1526-SM-32QPR 20.4
GTEX-WRHU-0326-SM-3MJFY 20.4
GTEX-Y3I4-1526-SM-4TT7K 20.4
GTEX-ZVE2-1226-SM-5NQ8R 20.4
GTEX-147F4-2826-SM-5NQBN 20.3
GTEX-T5JC-2126-SM-32PMO 20.3
GTEX-ZC5H-2626-SM-5J2MG 20.2
GTEX-ZVT2-1826-SM-5NQ8W 20.2
GTEX-11EI6-0626-SM-5985T 19.9
GTEX-13FTY-2226-SM-5J1ND 19.9
GTEX-13O3Q-2226-SM-5KM4O 19.9
GTEX-VUSG-2226-SM-4KKZO 19.9
GTEX-XMD2-0926-SM-4WWEF 19.6
GTEX-1192X-2326-SM-5987X 19.5
GTEX-13D11-1026-SM-5IJFB 19.5
GTEX-WI4N-1426-SM-3LK7H 19.5
GTEX-145LT-0726-SM-5S2VM 19.4
GTEX-14AS3-1626-SM-5S2OY 19.4
GTEX-1269C-2426-SM-5FQSN 19.3
GTEX-11DZ1-0326-SM-5N9BN 19.2
GTEX-11LCK-2426-SM-5HL5F 19.2
GTEX-ZU9S-1926-SM-5NQBP 19.2
GTEX-X15G-1626-SM-3NMB3 18.9
GTEX-131XW-0726-SM-5EGK3 18.8
GTEX-S341-1526-SM-4AD6K 18.8
GTEX-T2YK-2226-SM-32QPT 18.8
GTEX-UTHO-1026-SM-3GAF7 18.8
GTEX-XBED-1626-SM-47JYN 18.8
GTEX-XUZC-1626-SM-4BRVP 18.8
GTEX-11DXW-0626-SM-5N9ER 18.7
GTEX-WYBS-0926-SM-3NM94 18.7
GTEX-ZF29-1926-SM-5S2P1 18.7
GTEX-12ZZX-1126-SM-5EGKB 18.6
GTEX-1313W-0826-SM-5EQ4T 18.6
GTEX-ZF2S-2026-SM-5E461 18.6
GTEX-11WQC-1726-SM-5GU4W 18.5
GTEX-13QIC-2326-SM-5LU5N 18.4
GTEX-13S86-1226-SM-5S2OA 18.4
GTEX-144GL-2026-SM-5LU3O 18.3
GTEX-R55F-1726-SM-2TF4R 18.2
GTEX-13PL6-2926-SM-5L3I2 18.1
GTEX-S4P3-1326-SM-4AD6V 18.1
GTEX-13PVQ-1026-SM-5KM3M 18.0
GTEX-ZEX8-2226-SM-57WC6 18.0
GTEX-1314G-1226-SM-5BC6D 17.9
GTEX-Y111-2026-SM-4SOJA 17.9
GTEX-ZAJG-0626-SM-5HL8X 17.9
GTEX-ZV7C-1826-SM-5NQ83 17.9
GTEX-13N11-1726-SM-5J1OJ 17.8
GTEX-11EMC-2026-SM-5A5JV 17.6
GTEX-11OF3-1926-SM-59889 17.6
GTEX-SIU7-1626-SM-4BRUK 17.6
GTEX-117XS-1926-SM-5GICO 17.5
GTEX-11EM3-1326-SM-5N9C6 17.5
GTEX-WYVS-1726-SM-3NMAY 17.5
GTEX-ZF3C-2326-SM-5S2MZ 17.5
GTEX-139TU-0626-SM-5KM3X 17.4
GTEX-13O3O-0826-SM-5K7WE 17.4
GTEX-TMMY-0726-SM-33HBE 17.4
GTEX-XOT4-0726-SM-4GIAW 17.4
GTEX-13O3P-0826-SM-5L3DH 17.3
GTEX-11PRG-0826-SM-5EQ6A 17.2
GTEX-VJWN-0726-SM-3GIJ8 17.2
GTEX-ZYFC-0826-SM-5E44K 17.2
GTEX-Q2AG-0326-SM-48U1O 17.1
GTEX-ZTTD-1026-SM-51MRD 17.1
GTEX-13OW8-0226-SM-5K7UP 16.9
GTEX-YFC4-1426-SM-5IFJG 16.8
GTEX-ZUA1-1526-SM-59HLS 16.8
GTEX-ZVTK-0326-SM-51MRR 16.8
GTEX-132NY-0826-SM-5K7Y7 16.7
GTEX-WYJK-1326-SM-3NB2T 16.7
GTEX-1117F-2826-SM-5GZXL 16.6
GTEX-WOFL-0826-SM-3MJG1 16.6
GTEX-ZXES-0826-SM-5E43C 16.6
GTEX-T6MN-0726-SM-32PML 16.2
GTEX-ZYW4-0826-SM-5GIDG 16.2
GTEX-ZVZQ-0826-SM-51MRF 16.1
GTEX-11WQK-2426-SM-5GU5C 16.0
GTEX-111YS-1926-SM-5GICC 15.7
GTEX-13W46-0826-SM-5LU3H 15.7
GTEX-XMD1-0826-SM-4AT52 15.7
GTEX-12WSB-0626-SM-59HJO 15.6
GTEX-S7SE-0826-SM-4AT4D 15.6
GTEX-ZTX8-1226-SM-4YCE9 15.6
GTEX-X4EP-2926-SM-3P5YQ 15.4
GTEX-ZWKS-2826-SM-5NQ74 15.2
GTEX-11NV4-2026-SM-5N9DG 15.0
GTEX-132Q8-1426-SM-5EGK7 14.8
GTEX-11DXY-2326-SM-5GICW 14.6
GTEX-W5X1-2326-SM-3GIL6 14.2
GTEX-Y5LM-1726-SM-4VDSX 14.2
GTEX-14753-2426-SM-5LU8U 11.4
Show all

BREAST - FANTOM5 CAGE

Average Tags Per Million

63.7

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 63.7
FF:10080-102A8 77 years, female 63.7

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.