We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ACO2
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:47.4RPKM
FANTOM5:205.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA001097

 

Glial cells

High  

Neuronal cells

High  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

47.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 47.4
Samples: 117

Max RPKM: 88.7
Min RPKM: 14.6
Std RPKM: 16
Median RPKM: 46.3
GTEX-139TT-0011-R5b-SM-5K7W8 88.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 88.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 86.1
GTEX-QVJO-0011-R5A-SM-2S1QM 82.0
GTEX-T6MN-0011-R5A-SM-32QPD 81.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 79.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 76.3
GTEX-13G51-0011-R5a-SM-5L3EB 74.0
GTEX-N7MT-0011-R5a-SM-2I3G6 73.0
GTEX-T5JC-0011-R5A-SM-32PLK 70.8
GTEX-131YS-0011-R5b-SM-5K7YB 70.3
GTEX-N7MS-0011-R5a-SM-2HMK8 67.3
GTEX-145MH-0011-R5a-SM-5P9JT 66.5
GTEX-11H98-0011-R5b-SM-57WCF 65.7
GTEX-RU72-0011-R5A-SM-2TF6U 65.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 65.1
GTEX-R55E-0011-R5A-SM-2TC5N 64.8
GTEX-S7SE-0011-R5A-SM-2XCDA 64.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 63.4
GTEX-11GSP-0011-R5a-SM-57WBE 61.9
GTEX-1313W-0011-R5b-SM-5L3EP 61.9
GTEX-13SLX-0011-R5a-SM-5O9BV 61.6
GTEX-13NYS-0011-R5a-SM-5MR4D 61.1
GTEX-WVLH-0011-R5A-SM-3MJFW 61.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 59.8
GTEX-UTHO-0011-R5A-SM-3GIJD 59.6
GTEX-145LS-0011-R5a-SM-5SI65 57.7
GTEX-11OF3-0011-R5a-SM-57WB4 57.3
GTEX-14BIM-0011-R5b-SM-5S2RM 57.2
GTEX-13OW6-0011-R5a-SM-5O9BK 55.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 55.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 54.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 54.3
GTEX-13FLW-0011-R5a-SM-5LZX6 53.7
GTEX-13VXU-0011-R5a-SM-5O9D7 53.7
GTEX-13X6K-0011-R5b-SM-5PNUE 53.7
GTEX-WWYW-0011-R5A-SM-3NB3E 53.3
GTEX-WZTO-0011-R5B-SM-3NMC5 53.1
GTEX-132Q8-0011-R5a-SM-5IJDM 51.7
GTEX-13FLV-0011-R5a-SM-5LZWT 51.6
GTEX-13OVL-0011-R5b-SM-5L3FU 51.5
GTEX-13OW5-0011-R5b-SM-5L3FR 51.5
GTEX-12WSC-0011-R5b-SM-5CVNS 51.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 51.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50.3
GTEX-13X6I-0011-R5a-SM-5PNWW 49.4
GTEX-13FXS-0011-R5b-SM-5LZYE 49.1
GTEX-13JUV-0011-R5a-SM-5LZY5 49.0
GTEX-12WSB-0011-R5b-SM-5GU67 48.8
GTEX-14ABY-0011-R5b-SM-5SI7B 48.6
GTEX-ZUA1-0011-R5b-SM-51MTG 48.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 48.5
GTEX-RVPV-0011-R5A-SM-2TF69 48.0
GTEX-XMD1-0011-R5A-SM-4AT47 47.7
GTEX-13O3O-0011-R5b-SM-5KM44 46.9
GTEX-13OVH-0011-R5b-SM-5KM4L 46.3
GTEX-WL46-0011-R5A-SM-3LK6V 46.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 46.2
GTEX-13CZV-0011-R5a-SM-5K7XA 45.5
GTEX-1399T-0011-R5b-SM-5IJDK 44.9
GTEX-13S7M-0011-R5b-SM-5P9HS 44.5
GTEX-PVOW-0011-R5A-SM-32PL7 44.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 44.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 44.2
GTEX-X4XX-0011-R5A-SM-46MWN 42.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 42.4
GTEX-P44H-0011-R5A-SM-2XCEX 42.4
GTEX-NL3H-0011-R5a-SM-2I3GB 41.3
GTEX-ZE7O-0011-R5a-SM-57WBO 41.3
GTEX-ZXG5-0011-R5b-SM-57WBN 41.1
GTEX-OXRN-0011-R5A-SM-2I5EF 40.9
GTEX-11NV4-0011-R5a-SM-5NQ88 40.7
GTEX-13NYB-0011-R5a-SM-5MR45 40.7
GTEX-XOTO-0011-R5A-SM-4B657 40.7
GTEX-T2IS-0011-R5A-SM-32QP4 40.0
GTEX-1445S-0011-R5a-SM-5PNUS 39.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 39.5
GTEX-NPJ7-0011-R5a-SM-33HBK 39.2
GTEX-139T8-0011-R5b-SM-5J1MO 38.4
GTEX-12WSD-0011-R5b-SM-5CVNG 38.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 37.7
GTEX-TSE9-0011-R5A-SM-3DB7J 37.6
GTEX-YFC4-0011-R5a-SM-4RGLR 37.6
GTEX-144GO-0011-R5a-SM-5PNUR 36.2
GTEX-X585-0011-R5A-SM-46MVI 36.1
GTEX-NL4W-0011-R5a-SM-2I3GD 35.9
GTEX-X261-0011-R5A-SM-3NMB4 35.3
GTEX-12ZZX-0011-R5a-SM-5HL89 35.0
GTEX-12WSA-0011-R5b-SM-5GU5I 34.7
GTEX-Z93S-0011-R5b-SM-4RGNI 34.5
GTEX-12WSF-0011-R5a-SM-5HL8K 33.9
GTEX-ZV68-0011-R5a-SM-4YCDW 33.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 33.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 33.2
GTEX-11UD1-0011-R5b-SM-5P9FP 31.7
GTEX-13CIG-0011-R5b-SM-5L3F2 31.7
GTEX-14BIN-0011-R5b-SM-5SI78 30.7
GTEX-OHPN-0011-R5A-SM-2I5FF 30.2
GTEX-RVPU-0011-R5A-SM-2XCAD 28.7
GTEX-139TS-0011-R5b-SM-5J2MZ 28.6
GTEX-13FHP-0011-R5b-SM-5LZY2 28.0
GTEX-QMR6-0011-R5A-SM-32PKT 27.6
GTEX-13112-0011-R5b-SM-5DUV8 27.3
GTEX-ZVT3-0011-R5a-SM-51MSI 27.0
GTEX-144GL-0011-R5b-SM-5PNUJ 26.2
GTEX-12WSH-0011-R5b-SM-5P9F3 25.1
GTEX-YJ89-0011-R5a-SM-4V6GM 24.6
GTEX-13CF2-0011-R5a-SM-5LZWS 24.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 22.2
GTEX-11WQC-0011-R5a-SM-5BC74 22.1
GTEX-S7PM-0011-R5A-SM-3NM8G 18.0
GTEX-145MG-0011-R5b-SM-5S2VU 17.1
GTEX-1477Z-0011-R5b-SM-5PNUO 14.8
GTEX-13NZA-0011-R5b-SM-5KM4K 14.6
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

205.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 205.2
FF:10379-105H1 89 years, female 238.4
FF:10164-103B2 76 years, female 172.1

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.