We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
CHGA
  • premium

    TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:14.8RPKM
FANTOM5:84.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA017369

 

Antibody CAB000023

 

Antibody CAB040544

 

Antibody CAB055506

 

Antibody CAB058688

 

Glial cells

Not detected   Not detected   Not detected   Not detected   Not detected  

Neuronal cells

Low   Not detected   Low   Not detected   Medium  
         
         
         

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

14.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 14.8
Samples: 117

Max RPKM: 37
Min RPKM: 1
Std RPKM: 8.2
Median RPKM: 14.8
GTEX-139TT-0011-R5b-SM-5K7W8 37.0
GTEX-X585-0011-R5A-SM-46MVI 34.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 32.6
GTEX-13X6J-0011-R5b-SM-5PNWT 30.1
GTEX-145MH-0011-R5a-SM-5P9JT 29.4
GTEX-13FXS-0011-R5b-SM-5LZYE 28.7
GTEX-1399T-0011-R5b-SM-5IJDK 28.6
GTEX-12WSC-0011-R5b-SM-5CVNS 28.2
GTEX-14BIM-0011-R5b-SM-5S2RM 27.6
GTEX-TSE9-0011-R5A-SM-3DB7J 26.8
GTEX-14ABY-0011-R5b-SM-5SI7B 25.3
GTEX-132Q8-0011-R5a-SM-5IJDM 25.2
GTEX-13OVL-0011-R5b-SM-5L3FU 25.1
GTEX-WZTO-0011-R5B-SM-3NMC5 24.8
GTEX-13FLW-0011-R5a-SM-5LZX6 24.2
GTEX-145LS-0011-R5a-SM-5SI65 24.0
GTEX-Z93S-0011-R5b-SM-4RGNI 23.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 23.2
GTEX-13NYB-0011-R5a-SM-5MR45 23.0
GTEX-11NV4-0011-R5a-SM-5NQ88 22.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 22.4
GTEX-13SLX-0011-R5a-SM-5O9BV 22.4
GTEX-12WSF-0011-R5a-SM-5HL8K 22.1
GTEX-WL46-0011-R5A-SM-3LK6V 22.0
GTEX-13G51-0011-R5a-SM-5L3EB 21.9
GTEX-13VXU-0011-R5a-SM-5O9D7 21.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 21.5
GTEX-13X6K-0011-R5b-SM-5PNUE 21.5
GTEX-N7MS-0011-R5a-SM-2HMK8 21.1
GTEX-13O3O-0011-R5b-SM-5KM44 20.7
GTEX-13X6I-0011-R5a-SM-5PNWW 20.1
GTEX-1313W-0011-R5b-SM-5L3EP 19.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 19.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 19.4
GTEX-QVJO-0011-R5A-SM-2S1QM 19.3
GTEX-13FLV-0011-R5a-SM-5LZWT 19.0
GTEX-WWYW-0011-R5A-SM-3NB3E 18.9
GTEX-13OW6-0011-R5a-SM-5O9BK 18.7
GTEX-13S7M-0011-R5b-SM-5P9HS 18.7
GTEX-13CZV-0011-R5a-SM-5K7XA 18.3
GTEX-WVLH-0011-R5A-SM-3MJFW 18.1
GTEX-131YS-0011-R5b-SM-5K7YB 18.0
GTEX-11H98-0011-R5b-SM-57WCF 17.5
GTEX-ZUA1-0011-R5b-SM-51MTG 17.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 17.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 17.3
GTEX-R55E-0011-R5A-SM-2TC5N 17.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 16.9
GTEX-12ZZX-0011-R5a-SM-5HL89 16.8
GTEX-13OW5-0011-R5b-SM-5L3FR 16.8
GTEX-T2IS-0011-R5A-SM-32QP4 16.8
GTEX-RVPV-0011-R5A-SM-2TF69 16.6
GTEX-T5JC-0011-R5A-SM-32PLK 16.6
GTEX-13OW7-0011-R5b-SM-5O9DM 16.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 16.1
GTEX-13JUV-0011-R5a-SM-5LZY5 16.0
GTEX-13NYS-0011-R5a-SM-5MR4D 15.7
GTEX-13OVH-0011-R5b-SM-5KM4L 15.5
GTEX-12WSH-0011-R5b-SM-5P9F3 14.8
GTEX-NL3H-0011-R5a-SM-2I3GB 14.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 14.3
GTEX-11OF3-0011-R5a-SM-57WB4 14.1
GTEX-S7SE-0011-R5A-SM-2XCDA 14.1
GTEX-11GSP-0011-R5a-SM-57WBE 13.9
GTEX-12WSD-0011-R5b-SM-5CVNG 13.6
GTEX-N7MT-0011-R5a-SM-2I3G6 13.5
GTEX-RVPU-0011-R5A-SM-2XCAD 12.5
GTEX-T6MN-0011-R5A-SM-32QPD 12.4
GTEX-YFC4-0011-R5a-SM-4RGLR 12.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 12.3
GTEX-NL4W-0011-R5a-SM-2I3GD 12.2
GTEX-XOTO-0011-R5A-SM-4B657 12.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 11.9
GTEX-12WSB-0011-R5b-SM-5GU67 11.8
GTEX-PVOW-0011-R5A-SM-32PL7 11.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 11.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 11.0
GTEX-14BIN-0011-R5b-SM-5SI78 11.0
GTEX-OHPN-0011-R5A-SM-2I5FF 11.0
GTEX-ZXG5-0011-R5b-SM-57WBN 10.3
GTEX-YJ89-0011-R5a-SM-4V6GM 9.7
GTEX-XMD1-0011-R5A-SM-4AT47 9.2
GTEX-QMR6-0011-R5A-SM-32PKT 9.1
GTEX-RU72-0011-R5A-SM-2TF6U 9.1
GTEX-UTHO-0011-R5A-SM-3GIJD 8.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 8.3
GTEX-12WSA-0011-R5b-SM-5GU5I 8.0
GTEX-P44H-0011-R5A-SM-2XCEX 8.0
GTEX-X4XX-0011-R5A-SM-46MWN 7.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 7.5
GTEX-ZE7O-0011-R5a-SM-57WBO 7.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 7.0
GTEX-144GO-0011-R5a-SM-5PNUR 6.6
GTEX-11WQC-0011-R5a-SM-5BC74 6.4
GTEX-13JVG-0011-R5a-SM-5MR4O 6.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 6.1
GTEX-13FHP-0011-R5b-SM-5LZY2 5.8
GTEX-X261-0011-R5A-SM-3NMB4 5.6
GTEX-OXRN-0011-R5A-SM-2I5EF 5.4
GTEX-13112-0011-R5b-SM-5DUV8 4.7
GTEX-139TS-0011-R5b-SM-5J2MZ 4.5
GTEX-144GL-0011-R5b-SM-5PNUJ 4.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 4.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 3.9
GTEX-NPJ7-0011-R5a-SM-33HBK 3.9
GTEX-13CIG-0011-R5b-SM-5L3F2 3.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 3.6
GTEX-ZVT3-0011-R5a-SM-51MSI 3.2
GTEX-ZV68-0011-R5a-SM-4YCDW 3.0
GTEX-1477Z-0011-R5b-SM-5PNUO 2.6
GTEX-13CF2-0011-R5a-SM-5LZWS 2.4
GTEX-1445S-0011-R5a-SM-5PNUS 2.1
GTEX-11UD1-0011-R5b-SM-5P9FP 1.6
GTEX-13NZA-0011-R5b-SM-5KM4K 1.6
GTEX-145MG-0011-R5b-SM-5S2VU 1.4
GTEX-S7PM-0011-R5A-SM-3NM8G 1.1
GTEX-139T8-0011-R5b-SM-5J1MO 1.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

84.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 84.6
FF:10379-105H1 89 years, female 87.1
FF:10164-103B2 76 years, female 82.1

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.