We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
PLS3
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:13.0RPKM
FANTOM5:23.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA020433

 

Glial cells

Not detected  

Neuronal cells

Not detected  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

13.0

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 13.0
Samples: 117

Max RPKM: 24
Min RPKM: 6.5
Std RPKM: 3.8
Median RPKM: 12.6
GTEX-12WSA-0011-R5b-SM-5GU5I 24.0
GTEX-QMR6-0011-R5A-SM-32PKT 23.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 22.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 21.4
GTEX-PVOW-0011-R5A-SM-32PL7 20.8
GTEX-X4XX-0011-R5A-SM-46MWN 20.3
GTEX-11H98-0011-R5b-SM-57WCF 20.1
GTEX-N7MS-0011-R5a-SM-2HMK8 19.6
GTEX-12WSB-0011-R5b-SM-5GU67 19.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 19.5
GTEX-13JVG-0011-R5a-SM-5MR4O 19.4
GTEX-X585-0011-R5A-SM-46MVI 18.8
GTEX-X261-0011-R5A-SM-3NMB4 18.7
GTEX-144GO-0011-R5a-SM-5PNUR 17.4
GTEX-QVJO-0011-R5A-SM-2S1QM 17.2
GTEX-XMD1-0011-R5A-SM-4AT47 17.0
GTEX-RVPV-0011-R5A-SM-2TF69 16.8
GTEX-12WSF-0011-R5a-SM-5HL8K 16.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 16.6
GTEX-13NYB-0011-R5a-SM-5MR45 16.6
GTEX-13X6I-0011-R5a-SM-5PNWW 16.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 16.4
GTEX-ZVT3-0011-R5a-SM-51MSI 15.8
GTEX-R55E-0011-R5A-SM-2TC5N 15.7
GTEX-WZTO-0011-R5B-SM-3NMC5 15.6
GTEX-13FLV-0011-R5a-SM-5LZWT 15.4
GTEX-13NYS-0011-R5a-SM-5MR4D 15.4
GTEX-NPJ7-0011-R5a-SM-33HBK 15.2
GTEX-YFC4-0011-R5a-SM-4RGLR 15.2
GTEX-132Q8-0011-R5a-SM-5IJDM 15.1
GTEX-P44H-0011-R5A-SM-2XCEX 15.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 15.1
GTEX-139TS-0011-R5b-SM-5J2MZ 15.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 15.0
GTEX-13112-0011-R5b-SM-5DUV8 14.8
GTEX-144GL-0011-R5b-SM-5PNUJ 14.8
GTEX-OHPN-0011-R5A-SM-2I5FF 14.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 14.7
GTEX-13CF2-0011-R5a-SM-5LZWS 14.4
GTEX-14BIN-0011-R5b-SM-5SI78 14.0
GTEX-1399T-0011-R5b-SM-5IJDK 13.9
GTEX-ZE7O-0011-R5a-SM-57WBO 13.9
GTEX-WWYW-0011-R5A-SM-3NB3E 13.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 13.7
GTEX-11WQC-0011-R5a-SM-5BC74 13.6
GTEX-WL46-0011-R5A-SM-3LK6V 13.6
GTEX-13X6K-0011-R5b-SM-5PNUE 13.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 13.5
GTEX-11UD1-0011-R5b-SM-5P9FP 13.3
GTEX-13OW6-0011-R5a-SM-5O9BK 13.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 13.1
GTEX-NL3H-0011-R5a-SM-2I3GB 13.1
GTEX-139TT-0011-R5b-SM-5K7W8 13.0
GTEX-WVLH-0011-R5A-SM-3MJFW 13.0
GTEX-13O3O-0011-R5b-SM-5KM44 12.9
GTEX-11GSP-0011-R5a-SM-57WBE 12.8
GTEX-11NV4-0011-R5a-SM-5NQ88 12.6
GTEX-12WSD-0011-R5b-SM-5CVNG 12.6
GTEX-13OW7-0011-R5b-SM-5O9DM 12.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 12.6
GTEX-ZXG5-0011-R5b-SM-57WBN 12.5
GTEX-13JUV-0011-R5a-SM-5LZY5 12.4
GTEX-145LS-0011-R5a-SM-5SI65 12.4
GTEX-S7PM-0011-R5A-SM-3NM8G 12.4
GTEX-N7MT-0011-R5a-SM-2I3G6 12.3
GTEX-NL4W-0011-R5a-SM-2I3GD 12.3
GTEX-13FHP-0011-R5b-SM-5LZY2 12.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 12.1
GTEX-13OW5-0011-R5b-SM-5L3FR 12.0
GTEX-1445S-0011-R5a-SM-5PNUS 11.9
GTEX-13OVL-0011-R5b-SM-5L3FU 11.6
GTEX-RVPU-0011-R5A-SM-2XCAD 11.6
GTEX-S7SE-0011-R5A-SM-2XCDA 11.5
GTEX-XOTO-0011-R5A-SM-4B657 11.5
GTEX-12ZZX-0011-R5a-SM-5HL89 11.3
GTEX-14ABY-0011-R5b-SM-5SI7B 11.3
GTEX-ZUA1-0011-R5b-SM-51MTG 11.1
GTEX-RU72-0011-R5A-SM-2TF6U 10.9
GTEX-139T8-0011-R5b-SM-5J1MO 10.8
GTEX-13CZV-0011-R5a-SM-5K7XA 10.8
GTEX-13X6J-0011-R5b-SM-5PNWT 10.8
GTEX-13FLW-0011-R5a-SM-5LZX6 10.7
GTEX-T2IS-0011-R5A-SM-32QP4 10.7
GTEX-13FXS-0011-R5b-SM-5LZYE 10.6
GTEX-YJ89-0011-R5a-SM-4V6GM 10.2
GTEX-Z93S-0011-R5b-SM-4RGNI 10.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 10.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 10.1
GTEX-13OVH-0011-R5b-SM-5KM4L 10.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 10.0
GTEX-131YS-0011-R5b-SM-5K7YB 9.9
GTEX-13CIG-0011-R5b-SM-5L3F2 9.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 9.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 9.2
GTEX-ZV68-0011-R5a-SM-4YCDW 9.0
GTEX-13SLX-0011-R5a-SM-5O9BV 8.9
GTEX-11OF3-0011-R5a-SM-57WB4 8.8
GTEX-TSE9-0011-R5A-SM-3DB7J 8.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 8.6
GTEX-13NZA-0011-R5b-SM-5KM4K 8.6
GTEX-13VXU-0011-R5a-SM-5O9D7 8.6
GTEX-OXRN-0011-R5A-SM-2I5EF 8.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 8.5
GTEX-145MG-0011-R5b-SM-5S2VU 8.2
GTEX-1477Z-0011-R5b-SM-5PNUO 8.1
GTEX-13G51-0011-R5a-SM-5L3EB 8.0
GTEX-14BIM-0011-R5b-SM-5S2RM 8.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 7.9
GTEX-13S7M-0011-R5b-SM-5P9HS 7.8
GTEX-T6MN-0011-R5A-SM-32QPD 7.7
GTEX-UTHO-0011-R5A-SM-3GIJD 7.7
GTEX-12WSC-0011-R5b-SM-5CVNS 7.6
GTEX-T5JC-0011-R5A-SM-32PLK 7.6
GTEX-1313W-0011-R5b-SM-5L3EP 7.5
GTEX-145MH-0011-R5a-SM-5P9JT 7.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 7.0
GTEX-12WSH-0011-R5b-SM-5P9F3 6.5
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

23.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 23.4
FF:10164-103B2 76 years, female 26.9
FF:10379-105H1 89 years, female 19.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.