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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Santa Cruz Biotechnology
  Novocastra
  Atlas Antibodies
Sigma-Aldrich
 

Product name

HPA000609   SC-15378   NCL-EMERIN   AMAb90560  

Host species

Rabbit   Rabbit   Mouse   Mouse  

Clonality

pAb   pAb   mAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G   Not known   Protein A/G  

Other gene match

       

Released in version

1   1   1   12  

References

2        

VALIDATION SUMMARY

 
 

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 
Immunocytochemistry

Supported   Supported   Supported    
Immunohistochemistry

Supported   Supported   Supported   Supported  
Western blot

Supported   Uncertain   Uncertain   Supported  
Protein array

Supported        

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 

Standard validation

Supported   Supported   Supported    

       

Figure description

Immunofluorescent staining of human cell line U-251 MG shows localization to nuclear membrane & endoplasmic reticulum.   Immunofluorescent staining of human cell line U-2 OS shows localization to nuclear membrane & endoplasmic reticulum.   Immunofluorescent staining of human cell line U-2 OS shows localization to nuclear membrane.    

Antibody dilution

1:100   1:2000   1:20    

Literature conformity

The subcellular location is supported by literature.   The subcellular location is supported by literature.   The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 

Standard validation

Supported   Supported   Supported   Supported  

       

Figure description

Immunohistochemical staining of human skeletal muscle shows moderate nuclear membrane positivity in myocytes.   Immunohistochemical staining of human pancreas shows strong nuclear positivity in exocrine glandular cells.   Immunohistochemical staining of human kidney shows distinct of nuclear membranes positivity in renal cells.   Immunohistochemical staining of human testis shows nuclear and membranous positivity in cells in seminiferus ducts.  

Expression

RNA: detected in 37 tissues
Protein: detected in 70 cell types
  RNA: detected in 37 tissues
Protein: detected in 51 cell types
  RNA: detected in 37 tissues
Protein: detected in 59 cell types
  RNA: detected in 37 tissues
Protein: detected in 52 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:1500   1:2000   1:80   1:5000  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.   Mainly consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Single band corresponding to the predicted size in kDa (+/-20%).
  Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
  Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

       

Figure description

Lane 1: Marker [kDa] 207, 110, 79, 49, 32, 25, 17.1
Lane 2: RT4
Lane 3: EFO-21
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
      Lane 1: Marker [kDa] 250, 130, 100, 70, 55, 35, 25, 15, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

29, 24.9   29, 24.9   29, 24.9   29, 24.9  

Antibody dilution

1:500   1:500   1:500   1:500  

PROTEIN ARRAY

 
 

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
       

       

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.        

Antibody dilution

1:1000        

ANTIGEN INFORMATION

 
 

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 

Antigen

Recombinant protein fragment   Recombinant protein   Not known   Recombinant protein  

Length (aa)

112        

Antigen sequence

ASSYSFSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTY
GEPESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMY
GRDSACQSITHY
       

Matching transcripts

EMD-001 - ENSP00000358857 [99%]
EMD-010 - ENSP00000358850 [93%]
       

Other gene match

       
ANTIGEN VIEW
EMD-001
EMD-010

RELEVANT PUBLICATIONS

 
 

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 

1.

Impact of genomic stability on protein expression in endometrioid endometrial cancer
Lomnytska MI et al
Br J Cancer 2012;106(7):1297-305
       

2.

Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells
Stadler C et al
Nat Methods 2013;10(4):315-23
       
 

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