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NECAB2
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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:47.3RPKM
FANTOM5:163.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA013998

 

Antibody HPA014144

 

Antibody CAB068211

 

Glial cells

Not detected   Not detected   Medium  

Neuronal cells

High   High   High  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

47.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 47.3
Samples: 117

Max RPKM: 106.1
Min RPKM: 6.4
Std RPKM: 25.3
Median RPKM: 47.3
GTEX-T6MN-0011-R5A-SM-32QPD 106.1
GTEX-13G51-0011-R5a-SM-5L3EB 101.0
GTEX-12WSC-0011-R5b-SM-5CVNS 94.1
GTEX-131YS-0011-R5b-SM-5K7YB 94.1
GTEX-145MH-0011-R5a-SM-5P9JT 92.8
GTEX-T5JC-0011-R5A-SM-32PLK 91.0
GTEX-11OF3-0011-R5a-SM-57WB4 89.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 88.4
GTEX-ZUA1-0011-R5b-SM-51MTG 86.1
GTEX-1313W-0011-R5b-SM-5L3EP 85.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 83.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 83.3
GTEX-1399T-0011-R5b-SM-5IJDK 82.0
GTEX-13X6J-0011-R5b-SM-5PNWT 81.1
GTEX-139TT-0011-R5b-SM-5K7W8 80.9
GTEX-13VXU-0011-R5a-SM-5O9D7 80.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 76.9
GTEX-14ABY-0011-R5b-SM-5SI7B 76.1
GTEX-S7SE-0011-R5A-SM-2XCDA 74.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 74.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 73.0
GTEX-T2IS-0011-R5A-SM-32QP4 72.9
GTEX-13SLX-0011-R5a-SM-5O9BV 71.9
GTEX-P44H-0011-R5A-SM-2XCEX 71.2
GTEX-WVLH-0011-R5A-SM-3MJFW 70.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 70.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 68.8
GTEX-WZTO-0011-R5B-SM-3NMC5 68.8
GTEX-13FLW-0011-R5a-SM-5LZX6 68.3
GTEX-11H98-0011-R5b-SM-57WCF 67.8
GTEX-14BIM-0011-R5b-SM-5S2RM 67.1
GTEX-TSE9-0011-R5A-SM-3DB7J 67.0
GTEX-13CZV-0011-R5a-SM-5K7XA 64.5
GTEX-UTHO-0011-R5A-SM-3GIJD 63.4
GTEX-11GSP-0011-R5a-SM-57WBE 62.7
GTEX-13FXS-0011-R5b-SM-5LZYE 61.6
GTEX-N7MS-0011-R5a-SM-2HMK8 61.5
GTEX-11NV4-0011-R5a-SM-5NQ88 59.8
GTEX-WL46-0011-R5A-SM-3LK6V 59.8
GTEX-RVPU-0011-R5A-SM-2XCAD 59.5
GTEX-13JUV-0011-R5a-SM-5LZY5 59.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 58.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 57.1
GTEX-13X6K-0011-R5b-SM-5PNUE 56.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 55.2
GTEX-QVJO-0011-R5A-SM-2S1QM 54.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 53.9
GTEX-RU72-0011-R5A-SM-2TF6U 53.8
GTEX-13OVL-0011-R5b-SM-5L3FU 52.8
GTEX-13OW7-0011-R5b-SM-5O9DM 52.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 51.9
GTEX-X585-0011-R5A-SM-46MVI 51.8
GTEX-145LS-0011-R5a-SM-5SI65 50.5
GTEX-R55E-0011-R5A-SM-2TC5N 50.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50.0
GTEX-13OVH-0011-R5b-SM-5KM4L 48.3
GTEX-13FLV-0011-R5a-SM-5LZWT 48.1
GTEX-132Q8-0011-R5a-SM-5IJDM 47.5
GTEX-13OW6-0011-R5a-SM-5O9BK 47.3
GTEX-12WSD-0011-R5b-SM-5CVNG 46.5
GTEX-12WSF-0011-R5a-SM-5HL8K 46.0
GTEX-PVOW-0011-R5A-SM-32PL7 45.8
GTEX-WWYW-0011-R5A-SM-3NB3E 45.6
GTEX-13O3O-0011-R5b-SM-5KM44 43.7
GTEX-Z93S-0011-R5b-SM-4RGNI 43.7
GTEX-XOTO-0011-R5A-SM-4B657 41.7
GTEX-N7MT-0011-R5a-SM-2I3G6 41.1
GTEX-13NYB-0011-R5a-SM-5MR45 40.8
GTEX-13S7M-0011-R5b-SM-5P9HS 40.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 37.6
GTEX-13OW5-0011-R5b-SM-5L3FR 36.8
GTEX-RVPV-0011-R5A-SM-2TF69 34.5
GTEX-NL4W-0011-R5a-SM-2I3GD 34.3
GTEX-13X6I-0011-R5a-SM-5PNWW 34.0
GTEX-OHPN-0011-R5A-SM-2I5FF 33.5
GTEX-ZXG5-0011-R5b-SM-57WBN 32.8
GTEX-14BIN-0011-R5b-SM-5SI78 32.7
GTEX-YFC4-0011-R5a-SM-4RGLR 32.5
GTEX-13NYS-0011-R5a-SM-5MR4D 32.1
GTEX-12WSB-0011-R5b-SM-5GU67 30.5
GTEX-YJ89-0011-R5a-SM-4V6GM 29.6
GTEX-12ZZX-0011-R5a-SM-5HL89 29.4
GTEX-13CIG-0011-R5b-SM-5L3F2 28.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 28.5
GTEX-XMD1-0011-R5A-SM-4AT47 25.6
GTEX-12WSH-0011-R5b-SM-5P9F3 25.2
GTEX-OXRN-0011-R5A-SM-2I5EF 25.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 24.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 24.1
GTEX-13JVG-0011-R5a-SM-5MR4O 24.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 23.8
GTEX-13112-0011-R5b-SM-5DUV8 22.7
GTEX-NL3H-0011-R5a-SM-2I3GB 22.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 21.4
GTEX-QMR6-0011-R5A-SM-32PKT 21.2
GTEX-12WSA-0011-R5b-SM-5GU5I 19.6
GTEX-11WQC-0011-R5a-SM-5BC74 18.7
GTEX-144GO-0011-R5a-SM-5PNUR 18.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 17.6
GTEX-ZVT3-0011-R5a-SM-51MSI 17.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 16.4
GTEX-X4XX-0011-R5A-SM-46MWN 16.3
GTEX-ZV68-0011-R5a-SM-4YCDW 16.3
GTEX-144GL-0011-R5b-SM-5PNUJ 14.6
GTEX-X261-0011-R5A-SM-3NMB4 14.4
GTEX-13FHP-0011-R5b-SM-5LZY2 14.3
GTEX-139TS-0011-R5b-SM-5J2MZ 14.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 13.0
GTEX-139T8-0011-R5b-SM-5J1MO 12.0
GTEX-NPJ7-0011-R5a-SM-33HBK 11.8
GTEX-13CF2-0011-R5a-SM-5LZWS 11.4
GTEX-1477Z-0011-R5b-SM-5PNUO 11.2
GTEX-S7PM-0011-R5A-SM-3NM8G 11.2
GTEX-1445S-0011-R5a-SM-5PNUS 9.3
GTEX-13NZA-0011-R5b-SM-5KM4K 7.5
GTEX-11UD1-0011-R5b-SM-5P9FP 6.6
GTEX-145MG-0011-R5b-SM-5S2VU 6.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

163.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 163.6
FF:10379-105H1 89 years, female 197.9
FF:10164-103B2 76 years, female 129.3

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