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NECAB2
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    TISSUE

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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:46.9TPM
GTEx:28.8RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Not detected
Neuronal cells:Medium
Neuropil:Medium
 

Antibody staining

Antibody HPA013998

 

Antibody HPA014144

 

Antibody CAB068211

 

Endothelial cells

Not detected   Not detected   Not detected  

Glial cells

Not detected   Not detected   Medium  

Neuronal cells

Medium   High   Medium  

Neuropil

Medium   Medium   Medium  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

46.9

N/A Male, age 5
Sample 1
TPM: 23.5
overview Female, age 40
Sample 2
TPM: 28.5
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 88.6
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

28.8

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 30.1
Samples: 114

Max RPKM: 67.5
Min RPKM: 0.7
Std RPKM: 13.1
Median RPKM: 29.6
GTEX-131YS-3126-SM-5KLYT 67.5
GTEX-ZE7O-3126-SM-5HL5X 65.0
GTEX-T2IS-3026-SM-32QPM 57.1
GTEX-13QIC-2926-SM-5J2NF 55.8
GTEX-11NUK-2926-SM-5A5MD 55.7
GTEX-131XW-3126-SM-5LZUC 53.0
GTEX-ZAK1-3026-SM-5S2MJ 52.2
GTEX-Y111-2726-SM-4TT3N 52.0
GTEX-ZYFD-3026-SM-5E44C 50.8
GTEX-WZTO-2926-SM-3NM9I 49.9
GTEX-11GSO-2926-SM-5HL73 49.1
GTEX-YJ89-3026-SM-5IFJI 47.9
GTEX-14BMV-3026-SM-5S2PQ 47.2
GTEX-R55F-1326-SM-5S2V4 47.2
GTEX-13O3Q-2926-SM-5KM45 46.7
GTEX-T6MN-2626-SM-32PMQ 46.0
GTEX-T5JC-2426-SM-3NMDB 45.2
GTEX-Q2AG-2926-SM-2HMJ3 43.1
GTEX-Z93S-2926-SM-57WB9 43.0
GTEX-12WSC-3026-SM-5GCNF 42.6
GTEX-13SLX-3126-SM-5S2Q5 42.6
GTEX-145MG-3026-SM-5RQJA 42.6
GTEX-117XS-3026-SM-5N9CA 41.1
GTEX-145MH-3026-SM-5Q5DZ 40.3
GTEX-13NYC-2826-SM-5K7WR 39.7
GTEX-RNOR-2326-SM-2TF4I 39.6
GTEX-11ZUS-2926-SM-5FQSL 39.1
GTEX-WVLH-3026-SM-3MJG9 39.1
GTEX-ZUA1-3026-SM-59HJC 38.9
GTEX-XOTO-3026-SM-4B65M 38.1
GTEX-12126-1026-SM-5P9JJ 38.0
GTEX-13X6K-2926-SM-5Q5D5 36.9
GTEX-ZVT3-3026-SM-5E43N 36.8
GTEX-11DXW-1126-SM-5H12Q 36.5
GTEX-144GL-3026-SM-5Q5CW 35.9
GTEX-11PRG-2926-SM-5987A 35.5
GTEX-13X6J-3026-SM-5Q5CU 35.4
GTEX-11EMC-3226-SM-5EGKW 35.2
GTEX-12WSH-3026-SM-5CVNI 35.0
GTEX-13FLW-1426-SM-5K7YE 34.4
GTEX-14ASI-3026-SM-5S2PN 34.3
GTEX-12ZZY-3026-SM-5GCOU 32.8
GTEX-14A5I-2926-SM-5Q5CQ 32.8
GTEX-13S7M-3126-SM-5RQJQ 32.3
GTEX-PVOW-2526-SM-2XCF7 32.0
GTEX-11EI6-3026-SM-5GZZO 31.8
GTEX-147GR-3026-SM-5S2ML 31.7
GTEX-12ZZX-2926-SM-5GCOQ 31.5
GTEX-12WSD-3126-SM-5HL7P 31.0
GTEX-X4XX-3026-SM-3NMB2 31.0
GTEX-145LS-3126-SM-5Q5BY 30.9
GTEX-13FXS-3126-SM-5J2NN 30.5
GTEX-Y8DK-0826-SM-4TT3T 30.5
GTEX-12ZZZ-3026-SM-5BC67 30.4
GTEX-13OVH-3026-SM-5MR4N 30.4
GTEX-12ZZW-2926-SM-5LZUP 30.3
GTEX-132Q8-3026-SM-5PNVG 29.6
GTEX-1399T-3026-SM-5KLZC 29.6
GTEX-11OC5-0726-SM-5P9JK 29.4
GTEX-11GS4-3126-SM-5A5LH 28.7
GTEX-11DXY-3226-SM-5GIDE 28.6
GTEX-RU72-3026-SM-5SI7Y 27.9
GTEX-OXRN-2426-SM-2I5EQ 27.8
GTEX-13OW6-3026-SM-5J2MI 27.6
GTEX-1192X-3126-SM-5N9BY 26.9
GTEX-13VXU-2926-SM-5LU5C 26.9
GTEX-TSE9-3026-SM-3DB76 26.1
GTEX-11ONC-2926-SM-5P9JM 25.3
GTEX-QVJO-1426-SM-2S1QY 25.2
GTEX-13O3O-3126-SM-5KM3H 25.1
GTEX-13PL6-3126-SM-5LUAR 25.1
GTEX-1128S-2726-SM-5H12C 24.9
GTEX-WL46-2926-SM-3LK82 24.7
GTEX-WWYW-3126-SM-3NB39 24.7
GTEX-13JVG-3126-SM-5L3FH 24.5
GTEX-11NV4-2126-SM-5N9DS 24.0
GTEX-WHSE-3026-SM-3P5ZH 23.6
GTEX-13NYB-3026-SM-5IJD7 23.0
GTEX-X585-3026-SM-46MWF 22.9
GTEX-13FHP-3026-SM-5IJBS 22.8
GTEX-13OW8-2826-SM-5L3GC 22.6
GTEX-13JUV-2926-SM-5LZX7 22.3
GTEX-XLM4-3026-SM-4AT6L 22.1
GTEX-13OW7-3026-SM-5L3GY 21.6
GTEX-13OVJ-2826-SM-5L3GW 21.2
GTEX-QMR6-1426-SM-32PLA 21.2
GTEX-139T8-1026-SM-5J2MC 21.1
GTEX-13PVQ-3026-SM-5SI93 21.1
GTEX-1313W-3126-SM-5LZUI 20.0
GTEX-11GSP-3226-SM-5986O 19.8
GTEX-145MF-2726-SM-5O995 19.5
GTEX-YFC4-3126-SM-5PNV6 18.8
GTEX-NPJ7-2726-SM-2I3FT 17.7
GTEX-QDT8-2926-SM-32PKC 17.7
GTEX-11WQK-3026-SM-5EQL6 17.0
GTEX-111FC-3126-SM-5GZZ2 16.7
GTEX-144FL-3026-SM-5O99C 16.6
GTEX-NPJ8-1526-SM-2D7VU 16.6
GTEX-13FHO-3026-SM-5J1O9 15.3
GTEX-ZZPT-3026-SM-5GZXH 14.7
GTEX-UTHO-3026-SM-3GAFB 14.3
GTEX-13NYS-3126-SM-5KLYV 13.5
GTEX-ZAJG-3126-SM-5HL9J 13.2
GTEX-1117F-3226-SM-5N9CT 12.2
GTEX-1445S-3026-SM-5O9BR 11.1
GTEX-11TTK-2926-SM-5PNYP 11.0
GTEX-N7MT-1126-SM-5SI7V 11.0
GTEX-13IVO-2926-SM-5L3CZ 10.8
GTEX-QVUS-2826-SM-3GADB 10.7
GTEX-11O72-2926-SM-5BC4V 9.2
GTEX-13G51-3026-SM-5IJB8 8.3
GTEX-PWO3-0926-SM-2I5EY 7.7
GTEX-12WSA-2926-SM-5EQ4D 7.3
GTEX-11OF3-2926-SM-5HL78 0.7
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 27.4
Samples: 108

Max RPKM: 73.9
Min RPKM: 6.4
Std RPKM: 12.1
Median RPKM: 26
GTEX-Z93S-0011-R10a-SM-4RGNM 73.9
GTEX-12ZZY-0011-R10b-SM-5HL7W 72.6
GTEX-13O3Q-0011-R10b-SM-5KM39 55.7
GTEX-13OW6-0011-R10a-SM-5L3HE 49.3
GTEX-T5JC-0011-R10A-SM-32PM2 47.4
GTEX-YJ89-0011-R10a-SM-4SOK9 46.2
GTEX-12126-0011-R10b-SM-5BC6T 44.9
GTEX-13SLX-0011-R10a-SM-5P9HV 44.4
GTEX-12WSM-0011-R10a-SM-5DUWV 43.1
GTEX-1313W-0011-R10b-SM-5DUXA 42.7
GTEX-13NZA-0011-R10b-SM-5KM54 42.4
GTEX-12WSH-0011-R10a-SM-5LZUS 42.0
GTEX-13O3O-0011-R10a-SM-5LUA9 41.4
GTEX-14BIN-0011-R10a-SM-5S2UA 40.8
GTEX-13OW7-0011-R10a-SM-5L3H3 40.6
GTEX-131YS-0011-R10b-SM-5EQ5N 40.2
GTEX-ZVT3-0011-R10b-SM-57WB6 40.0
GTEX-131XH-0011-R10a-SM-5EGLJ 39.7
GTEX-14ASI-0011-R10b-SM-5S2VZ 38.5
GTEX-139TS-0011-R10a-SM-5K7TU 38.3
GTEX-13X6J-0011-R10b-SM-5PNWA 38.3
GTEX-N7MS-0011-R10A-SM-2HMJK 38.3
GTEX-12WSC-0011-R10a-SM-5GU57 37.4
GTEX-13FLV-0011-R10b-SM-5LZZ2 36.6
GTEX-13N1W-0011-R10b-SM-5MR4H 36.2
GTEX-11WQC-0011-R10a-SM-57WCT 35.3
GTEX-11ZUS-0011-R10b-SM-5BC79 35.2
GTEX-13QIC-0011-R10a-SM-5O9C7 34.8
GTEX-13FTZ-0011-R10b-SM-5KLZS 34.3
GTEX-147GR-0011-R10b-SM-5S2UM 34.3
GTEX-12ZZX-0011-R10b-SM-5DUWK 33.2
GTEX-12WSF-0011-R10a-SM-5LZVH 33.1
GTEX-14BIL-0011-R10a-SM-5SI75 32.9
GTEX-13FXS-0011-R10a-SM-5J2MA 32.2
GTEX-13FLW-0011-R10b-SM-5LZZF 31.6
GTEX-ZVZQ-0011-R10b-SM-51MRT 31.0
GTEX-Q2AG-0011-R10A-SM-2HMLA 30.9
GTEX-T6MN-0011-R10A-SM-32QP7 30.7
GTEX-12ZZZ-0011-R10a-SM-5P9HC 30.2
GTEX-ZUA1-0011-R10a-SM-51MT6 29.8
GTEX-147F4-0011-R10b-SM-5S2WC 29.2
GTEX-WZTO-0011-R10B-SM-4E3KB 28.9
GTEX-13NYB-0011-R10a-SM-5KM43 28.3
GTEX-P44H-0011-R10A-SM-2XCEK 27.9
GTEX-13NYS-0011-R10a-SM-5MR4S 27.8
GTEX-145LS-0011-R10a-SM-5PNUQ 27.6
GTEX-TSE9-0011-R10A-SM-3DB7O 27.6
GTEX-13S7M-0011-R10b-SM-5PNZB 27.2
GTEX-OXRN-0011-R10A-SM-2I5GC 27.2
GTEX-S7SE-0011-R10A-SM-2XCDF 27.2
GTEX-13N2G-0011-R10a-SM-5MR34 26.9
GTEX-145MG-0011-R10a-SM-5PNWG 26.7
GTEX-13OVL-0011-R10a-SM-5L3GS 26.4
GTEX-13OW8-0011-R10a-SM-5L3H6 26.2
GTEX-ZDXO-0011-R10a-SM-4WWD8 25.9
GTEX-YFC4-0011-R10a-SM-4SOK5 25.8
GTEX-WVLH-0011-R10A-SM-3MJFM 25.2
GTEX-WL46-0011-R10A-SM-3MJFQ 24.8
GTEX-Y8DK-0011-R10A-SM-4SOK1 24.4
GTEX-13X6K-0011-R10a-SM-5P9JR 23.9
GTEX-12WSE-0011-R10b-SM-5P9JV 23.7
GTEX-QMR6-0011-R10A-SM-32PKO 23.3
GTEX-ZXG5-0011-R10a-SM-57WDD 23.0
GTEX-13FHO-0011-R10b-SM-5J2MM 22.9
GTEX-13G51-0011-R10b-SM-5LZYF 22.6
GTEX-13JUV-0011-R10b-SM-5LZXR 21.9
GTEX-145LU-0011-R10a-SM-5PNWJ 21.7
GTEX-NL4W-0011-R10A-SM-2I3DY 21.2
GTEX-ZF28-0011-R10a-SM-4WWEH 20.9
GTEX-13OVJ-0011-R10b-SM-5L3HT 20.6
GTEX-11GSP-0011-R10a-SM-5NQ7J 20.5
GTEX-13QJC-0011-R10a-SM-5SI63 20.5
GTEX-145MH-0011-R10b-SM-5PNUK 20.4
GTEX-13CZV-0011-R10b-SM-5LZYD 20.2
GTEX-13RTJ-0011-R10b-SM-5O9CW 20.2
GTEX-1477Z-0011-R10b-SM-5S2RF 20.2
GTEX-N7MT-0011-R10A-SM-2I3E1 20.2
GTEX-NL3H-0011-R10A-SM-2I3E9 20.1
GTEX-X4XX-0011-R10B-SM-46MWO 19.7
GTEX-13X6I-0011-R10a-SM-5PNWI 19.3
GTEX-14753-0011-R10b-SM-5S2WE 19.2
GTEX-12ZZW-0011-R10b-SM-5HL9X 18.5
GTEX-X585-0011-R10A-SM-46MUY 18.5
GTEX-NPJ8-0011-R10A-SM-2YUMO 18.2
GTEX-11H98-0011-R10b-SM-5NQ98 18.1
GTEX-12WSD-0011-R10b-SM-5GU79 18.1
GTEX-132Q8-0011-R10b-SM-5DUWZ 18.0
GTEX-ZV68-0011-R10a-SM-51MT7 17.2
GTEX-OXRO-0011-R10A-SM-2I5EH 16.8
GTEX-131XW-0011-R10a-SM-5DUVA 16.6
GTEX-13SLW-0011-R10a-SM-5S2UI 16.4
GTEX-ZAB4-0011-R10a-SM-4SOKH 16.4
GTEX-11WQK-0011-R10a-SM-5BC6R 16.1
GTEX-X261-0011-R10B-SM-4E3JT 16.1
GTEX-XLM4-0011-R10A-SM-4AT5P 15.4
GTEX-WWYW-0011-R10A-SM-3NB35 14.2
GTEX-ZE7O-0011-R10a-SM-57WAZ 13.8
GTEX-13JVG-0011-R10b-SM-5KM2P 13.7
GTEX-QVUS-0011-R10A-SM-3GIK3 13.4
GTEX-NPJ7-0011-R10A-SM-2I3E5 13.2
GTEX-RVPU-0011-R10A-SM-2XCAH 13.0
GTEX-X4EP-0011-R10B-SM-4QASJ 12.1
GTEX-1445S-0011-R10a-SM-5PNWB 11.0
GTEX-QVJO-0011-R10A-SM-2S1QJ 10.5
GTEX-QDT8-0011-R10A-SM-32PKG 8.9
GTEX-12WSA-0011-R10b-SM-5P9ET 7.9
GTEX-13IVO-0011-R10a-SM-5LZY3 7.3
GTEX-XMD1-0011-R10A-SM-4AT4A 6.4
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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