Expression of RPAP1 in cancer - Summary

CANCER ATLAS

Gene description

RNA polymerase II associated protein 1

Protein class

Predicted intracellular proteins, Predicted membrane proteins

Protein evidence

Evidence at protein level

Colorectal cancer

Breast cancer

Prostate cancer

Lung cancer

Liver cancer

STAINING SUMMARY

HPA041739

GENE INFORMATION
Gene name	RPAP1 (HGNC Symbol)
Synonyms	DKFZP727M111, FLJ12732, KIAA1403, MGC858
Description	RNA polymerase II associated protein 1 (HGNC Symbol)
Entrez gene summary	This protein forms part of the RNA polymerase II (RNAPII) enzyme complex and may recruit RNAPII to chromatin through its interaction with acetylated histones. [provided by RefSeq, Jul 2012]
Chromosome	15
Cytoband	q15.1
Chromosome location (bp)	41517176 - 41544269
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000103932 (version 83.38)
Entrez gene	26015
UniProt	Q9BWH6 (UniProt - Evidence at protein level)
neXtProt	NX_Q9BWH6
Antibodypedia	RPAP1 antibodies

PROTEIN BROWSER

RPAP1-001	RPAP1-004	RPAP1-008	RPAP1-010	RPAP1-012

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RPAP1-001 ENSP00000306123 ENST00000304330	Q9BWH6 [Direct mapping] RNA polymerase II-associated protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003677 [DNA binding] GO:0003899 [DNA-directed RNA polymerase activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0006366 [transcription from RNA polymerase II promoter] Show all	1393 aa 152.8 kDa	No	1
RPAP1-004 ENSP00000456207 ENST00000561603	H3BRE8 [Direct mapping] RNA polymerase II-associated protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005634 [nucleus] GO:0006366 [transcription from RNA polymerase II promoter] Show all	1128 aa 123.1 kDa	No	1
RPAP1-008 ENSP00000455527 ENST00000566863	H3BPY8 [Direct mapping] RNA polymerase II-associated protein 1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005634 [nucleus] GO:0006366 [transcription from RNA polymerase II promoter] Show all	128 aa 13.8 kDa	No	0
RPAP1-010 ENSP00000455381 ENST00000567866	H3BPM3 [Direct mapping] RNA polymerase II-associated protein 1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005634 [nucleus] GO:0006366 [transcription from RNA polymerase II promoter] Show all	180 aa 19.3 kDa	No	0
RPAP1-012 ENSP00000457203 ENST00000565035	H3BTJ6 [Direct mapping] RNA polymerase II-associated protein 1 Show all	Phobius predicted membrane proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005634 [nucleus] GO:0006366 [transcription from RNA polymerase II promoter] Show all	200 aa 22 kDa	No	0