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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:36.6RPKM
FANTOM5:174.5Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA006880

 

Antibody HPA053715

 

Antibody CAB033274

 

Glial cells

Low   Not detected   Not detected  

Neuronal cells

Low   Not detected   Not detected  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

36.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 36.6
Samples: 117

Max RPKM: 96.7
Min RPKM: 12.9
Std RPKM: 12.4
Median RPKM: 36.4
GTEX-139TT-0011-R5b-SM-5K7W8 96.7
GTEX-T2IS-0011-R5A-SM-32QP4 82.5
GTEX-12WSA-0011-R5b-SM-5GU5I 62.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 59.4
GTEX-13FLV-0011-R5a-SM-5LZWT 58.4
GTEX-T6MN-0011-R5A-SM-32QPD 58.1
GTEX-R55E-0011-R5A-SM-2TC5N 56.4
GTEX-WVLH-0011-R5A-SM-3MJFW 54.6
GTEX-QVJO-0011-R5A-SM-2S1QM 53.5
GTEX-WZTO-0011-R5B-SM-3NMC5 52.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50.8
GTEX-PVOW-0011-R5A-SM-32PL7 49.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 49.6
GTEX-14ABY-0011-R5b-SM-5SI7B 48.8
GTEX-13CZV-0011-R5a-SM-5K7XA 48.5
GTEX-WWYW-0011-R5A-SM-3NB3E 47.5
GTEX-11H98-0011-R5b-SM-57WCF 47.3
GTEX-13OVL-0011-R5b-SM-5L3FU 47.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 47.2
GTEX-YFC4-0011-R5a-SM-4RGLR 45.9
GTEX-13FLW-0011-R5a-SM-5LZX6 45.7
GTEX-13OW7-0011-R5b-SM-5O9DM 45.6
GTEX-UTHO-0011-R5A-SM-3GIJD 45.5
GTEX-P44H-0011-R5A-SM-2XCEX 44.2
GTEX-13SLX-0011-R5a-SM-5O9BV 43.8
GTEX-131YS-0011-R5b-SM-5K7YB 43.6
GTEX-13FXS-0011-R5b-SM-5LZYE 43.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 42.9
GTEX-RU72-0011-R5A-SM-2TF6U 42.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 42.7
GTEX-TSE9-0011-R5A-SM-3DB7J 42.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 42.0
GTEX-S7SE-0011-R5A-SM-2XCDA 41.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 41.4
GTEX-13NYB-0011-R5a-SM-5MR45 41.4
GTEX-12ZZX-0011-R5a-SM-5HL89 41.1
GTEX-13X6J-0011-R5b-SM-5PNWT 41.1
GTEX-N7MS-0011-R5a-SM-2HMK8 41.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 40.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 40.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 40.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 39.7
GTEX-13X6I-0011-R5a-SM-5PNWW 39.6
GTEX-11WQC-0011-R5a-SM-5BC74 39.5
GTEX-13G51-0011-R5a-SM-5L3EB 39.3
GTEX-12WSB-0011-R5b-SM-5GU67 39.0
GTEX-XOTO-0011-R5A-SM-4B657 38.6
GTEX-ZUA1-0011-R5b-SM-51MTG 38.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 38.2
GTEX-12WSF-0011-R5a-SM-5HL8K 37.9
GTEX-RVPV-0011-R5A-SM-2TF69 37.8
GTEX-N7MT-0011-R5a-SM-2I3G6 37.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 37.6
GTEX-13JUV-0011-R5a-SM-5LZY5 37.2
GTEX-13X6K-0011-R5b-SM-5PNUE 37.1
GTEX-132Q8-0011-R5a-SM-5IJDM 36.9
GTEX-13JVG-0011-R5a-SM-5MR4O 36.8
GTEX-12WSD-0011-R5b-SM-5CVNG 36.4
GTEX-T5JC-0011-R5A-SM-32PLK 36.4
GTEX-144GO-0011-R5a-SM-5PNUR 36.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 35.8
GTEX-145MH-0011-R5a-SM-5P9JT 35.4
GTEX-144GL-0011-R5b-SM-5PNUJ 35.2
GTEX-14BIN-0011-R5b-SM-5SI78 35.1
GTEX-NL4W-0011-R5a-SM-2I3GD 35.1
GTEX-12WSC-0011-R5b-SM-5CVNS 34.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 33.9
GTEX-13VXU-0011-R5a-SM-5O9D7 33.7
GTEX-NPJ7-0011-R5a-SM-33HBK 32.9
GTEX-13OVH-0011-R5b-SM-5KM4L 32.3
GTEX-145LS-0011-R5a-SM-5SI65 32.0
GTEX-ZV68-0011-R5a-SM-4YCDW 31.5
GTEX-11NV4-0011-R5a-SM-5NQ88 31.4
GTEX-ZE7O-0011-R5a-SM-57WBO 30.8
GTEX-1399T-0011-R5b-SM-5IJDK 30.7
GTEX-X261-0011-R5A-SM-3NMB4 30.7
GTEX-14BIM-0011-R5b-SM-5S2RM 30.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 30.4
GTEX-NL3H-0011-R5a-SM-2I3GB 30.4
GTEX-1313W-0011-R5b-SM-5L3EP 30.0
GTEX-13OW5-0011-R5b-SM-5L3FR 29.8
GTEX-13O3O-0011-R5b-SM-5KM44 29.6
GTEX-13CIG-0011-R5b-SM-5L3F2 29.5
GTEX-1445S-0011-R5a-SM-5PNUS 29.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 29.0
GTEX-139TS-0011-R5b-SM-5J2MZ 28.9
GTEX-RVPU-0011-R5A-SM-2XCAD 28.8
GTEX-OXRN-0011-R5A-SM-2I5EF 28.6
GTEX-ZXG5-0011-R5b-SM-57WBN 28.6
GTEX-11GSP-0011-R5a-SM-57WBE 28.4
GTEX-13112-0011-R5b-SM-5DUV8 27.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 27.4
GTEX-11OF3-0011-R5a-SM-57WB4 27.2
GTEX-OHPN-0011-R5A-SM-2I5FF 26.4
GTEX-13NYS-0011-R5a-SM-5MR4D 26.3
GTEX-QMR6-0011-R5A-SM-32PKT 26.3
GTEX-13S7M-0011-R5b-SM-5P9HS 24.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 24.7
GTEX-XMD1-0011-R5A-SM-4AT47 24.6
GTEX-13FHP-0011-R5b-SM-5LZY2 24.4
GTEX-YJ89-0011-R5a-SM-4V6GM 24.3
GTEX-ZVT3-0011-R5a-SM-51MSI 24.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 23.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 23.8
GTEX-139T8-0011-R5b-SM-5J1MO 23.7
GTEX-Z93S-0011-R5b-SM-4RGNI 22.9
GTEX-WL46-0011-R5A-SM-3LK6V 22.3
GTEX-X585-0011-R5A-SM-46MVI 22.1
GTEX-S7PM-0011-R5A-SM-3NM8G 21.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 21.1
GTEX-11UD1-0011-R5b-SM-5P9FP 20.0
GTEX-13CF2-0011-R5a-SM-5LZWS 18.8
GTEX-145MG-0011-R5b-SM-5S2VU 18.6
GTEX-12WSH-0011-R5b-SM-5P9F3 18.0
GTEX-13NZA-0011-R5b-SM-5KM4K 14.9
GTEX-1477Z-0011-R5b-SM-5PNUO 14.6
GTEX-X4XX-0011-R5A-SM-46MWN 12.9
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

174.5

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 174.5
FF:10379-105H1 89 years, female 175.7
FF:10164-103B2 76 years, female 173.3

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