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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:43.6RPKM
FANTOM5:110.7Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA041605

 

Antibody HPA043576

 

Antibody CAB034345

 

Glial cells

Medium   Not detected   Not detected  

Neuronal cells

Medium   Low   Medium  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

43.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 43.6
Samples: 117

Max RPKM: 93
Min RPKM: 18.3
Std RPKM: 11.2
Median RPKM: 42.1
GTEX-12WSA-0011-R5b-SM-5GU5I 93.0
GTEX-139T8-0011-R5b-SM-5J1MO 74.7
GTEX-139TT-0011-R5b-SM-5K7W8 70.2
GTEX-ZUA1-0011-R5b-SM-51MTG 67.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 65.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 63.3
GTEX-132Q8-0011-R5a-SM-5IJDM 62.1
GTEX-13X6K-0011-R5b-SM-5PNUE 61.1
GTEX-12WSB-0011-R5b-SM-5GU67 60.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 59.7
GTEX-11H98-0011-R5b-SM-57WCF 58.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 58.4
GTEX-T6MN-0011-R5A-SM-32QPD 58.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 57.2
GTEX-13NYB-0011-R5a-SM-5MR45 56.9
GTEX-13FLV-0011-R5a-SM-5LZWT 56.8
GTEX-X585-0011-R5A-SM-46MVI 56.1
GTEX-13NYS-0011-R5a-SM-5MR4D 54.4
GTEX-1399T-0011-R5b-SM-5IJDK 53.9
GTEX-13JUV-0011-R5a-SM-5LZY5 53.6
GTEX-13JVG-0011-R5a-SM-5MR4O 52.9
GTEX-13FLW-0011-R5a-SM-5LZX6 52.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 51.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 51.7
GTEX-14BIM-0011-R5b-SM-5S2RM 51.5
GTEX-TSE9-0011-R5A-SM-3DB7J 50.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50.5
GTEX-XOTO-0011-R5A-SM-4B657 49.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 49.3
GTEX-13OVH-0011-R5b-SM-5KM4L 49.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 47.9
GTEX-12WSF-0011-R5a-SM-5HL8K 47.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 47.2
GTEX-11GSP-0011-R5a-SM-57WBE 47.1
GTEX-12WSC-0011-R5b-SM-5CVNS 46.9
GTEX-OHPN-0011-R5A-SM-2I5FF 46.5
GTEX-N7MT-0011-R5a-SM-2I3G6 46.4
GTEX-11OF3-0011-R5a-SM-57WB4 46.2
GTEX-13CZV-0011-R5a-SM-5K7XA 46.1
GTEX-11NV4-0011-R5a-SM-5NQ88 45.2
GTEX-T5JC-0011-R5A-SM-32PLK 45.0
GTEX-WWYW-0011-R5A-SM-3NB3E 45.0
GTEX-13X6I-0011-R5a-SM-5PNWW 44.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 44.7
GTEX-13VXU-0011-R5a-SM-5O9D7 44.6
GTEX-13FXS-0011-R5b-SM-5LZYE 44.5
GTEX-RVPV-0011-R5A-SM-2TF69 44.3
GTEX-13SLX-0011-R5a-SM-5O9BV 43.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 43.7
GTEX-145LS-0011-R5a-SM-5SI65 43.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 43.6
GTEX-R55E-0011-R5A-SM-2TC5N 43.5
GTEX-ZE7O-0011-R5a-SM-57WBO 43.4
GTEX-X261-0011-R5A-SM-3NMB4 43.3
GTEX-ZV68-0011-R5a-SM-4YCDW 42.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 42.5
GTEX-13CIG-0011-R5b-SM-5L3F2 42.2
GTEX-131YS-0011-R5b-SM-5K7YB 42.1
GTEX-RU72-0011-R5A-SM-2TF6U 42.1
GTEX-WVLH-0011-R5A-SM-3MJFW 42.1
GTEX-X4XX-0011-R5A-SM-46MWN 42.0
GTEX-14ABY-0011-R5b-SM-5SI7B 41.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 41.9
GTEX-13G51-0011-R5a-SM-5L3EB 41.8
GTEX-145MH-0011-R5a-SM-5P9JT 41.6
GTEX-N7MS-0011-R5a-SM-2HMK8 41.5
GTEX-13OW5-0011-R5b-SM-5L3FR 40.8
GTEX-YJ89-0011-R5a-SM-4V6GM 40.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 40.5
GTEX-XMD1-0011-R5A-SM-4AT47 40.2
GTEX-WL46-0011-R5A-SM-3LK6V 40.1
GTEX-13OW7-0011-R5b-SM-5O9DM 39.9
GTEX-QVJO-0011-R5A-SM-2S1QM 39.9
GTEX-WZTO-0011-R5B-SM-3NMC5 39.9
GTEX-ZXG5-0011-R5b-SM-57WBN 39.4
GTEX-1445S-0011-R5a-SM-5PNUS 39.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 39.2
GTEX-1313W-0011-R5b-SM-5L3EP 39.0
GTEX-NL4W-0011-R5a-SM-2I3GD 39.0
GTEX-13OW6-0011-R5a-SM-5O9BK 38.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 38.5
GTEX-144GO-0011-R5a-SM-5PNUR 38.3
GTEX-13X6J-0011-R5b-SM-5PNWT 38.2
GTEX-13S7M-0011-R5b-SM-5P9HS 37.8
GTEX-ZVT3-0011-R5a-SM-51MSI 37.8
GTEX-NPJ7-0011-R5a-SM-33HBK 37.3
GTEX-12ZZX-0011-R5a-SM-5HL89 37.0
GTEX-13O3O-0011-R5b-SM-5KM44 36.7
GTEX-13OVL-0011-R5b-SM-5L3FU 36.6
GTEX-13112-0011-R5b-SM-5DUV8 36.0
GTEX-11WQC-0011-R5a-SM-5BC74 35.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 35.9
GTEX-12WSD-0011-R5b-SM-5CVNG 35.8
GTEX-YFC4-0011-R5a-SM-4RGLR 35.8
GTEX-S7SE-0011-R5A-SM-2XCDA 35.2
GTEX-14BIN-0011-R5b-SM-5SI78 35.1
GTEX-139TS-0011-R5b-SM-5J2MZ 34.9
GTEX-RVPU-0011-R5A-SM-2XCAD 34.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 34.1
GTEX-P44H-0011-R5A-SM-2XCEX 33.4
GTEX-QMR6-0011-R5A-SM-32PKT 33.3
GTEX-NL3H-0011-R5a-SM-2I3GB 33.2
GTEX-11UD1-0011-R5b-SM-5P9FP 31.2
GTEX-12WSH-0011-R5b-SM-5P9F3 30.6
GTEX-13FHP-0011-R5b-SM-5LZY2 30.5
GTEX-144GL-0011-R5b-SM-5PNUJ 30.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 30.1
GTEX-13CF2-0011-R5a-SM-5LZWS 30.0
GTEX-Z93S-0011-R5b-SM-4RGNI 28.8
GTEX-UTHO-0011-R5A-SM-3GIJD 28.7
GTEX-1477Z-0011-R5b-SM-5PNUO 27.8
GTEX-S7PM-0011-R5A-SM-3NM8G 26.6
GTEX-OXRN-0011-R5A-SM-2I5EF 25.9
GTEX-PVOW-0011-R5A-SM-32PL7 25.0
GTEX-145MG-0011-R5b-SM-5S2VU 24.9
GTEX-13NZA-0011-R5b-SM-5KM4K 23.5
GTEX-T2IS-0011-R5A-SM-32QP4 18.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

110.7

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 110.7
FF:10164-103B2 76 years, female 151.2
FF:10379-105H1 89 years, female 70.3

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