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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:768.7TPM
GTEx:358.7RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Medium
Neuronal cells:Medium
Neuropil:Medium
 

Antibody staining

Antibody HPA003282

 

Antibody CAB020828

 

Endothelial cells

Not detected   Not detected  

Glial cells

Not detected   Medium  

Neuronal cells

Low   Medium  

Neuropil

Low   Medium  
   
   
   

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

768.7

N/A Male, age 5
Sample 1
TPM: 524.8
overview Female, age 40
Sample 2
TPM: 1394.1
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 387.2
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

358.7

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 370.0
Samples: 114

Max RPKM: 667.9
Min RPKM: 199.1
Std RPKM: 87.9
Median RPKM: 358.1
GTEX-13OVJ-2826-SM-5L3GW 667.9
GTEX-11EMC-3226-SM-5EGKW 562.5
GTEX-1445S-3026-SM-5O9BR 547.2
GTEX-12WSD-3126-SM-5HL7P 539.8
GTEX-11GSP-3226-SM-5986O 538.7
GTEX-11TTK-2926-SM-5PNYP 534.6
GTEX-12ZZW-2926-SM-5LZUP 519.4
GTEX-11GSO-2926-SM-5HL73 518.1
GTEX-ZE7O-3126-SM-5HL5X 507.5
GTEX-14A5I-2926-SM-5Q5CQ 503.3
GTEX-131XW-3126-SM-5LZUC 497.3
GTEX-13X6K-2926-SM-5Q5D5 493.9
GTEX-11OC5-0726-SM-5P9JK 487.4
GTEX-13OW8-2826-SM-5L3GC 479.9
GTEX-13S7M-3126-SM-5RQJQ 468.9
GTEX-1117F-3226-SM-5N9CT 466.2
GTEX-13JVG-3126-SM-5L3FH 455.2
GTEX-13FXS-3126-SM-5J2NN 452.9
GTEX-11OF3-2926-SM-5HL78 451.7
GTEX-ZVT3-3026-SM-5E43N 448.0
GTEX-11ONC-2926-SM-5P9JM 441.9
GTEX-PWO3-0926-SM-2I5EY 440.8
GTEX-145MF-2726-SM-5O995 440.3
GTEX-13OW7-3026-SM-5L3GY 437.5
GTEX-QVUS-2826-SM-3GADB 437.5
GTEX-1399T-3026-SM-5KLZC 432.1
GTEX-144GL-3026-SM-5Q5CW 429.5
GTEX-13FHO-3026-SM-5J1O9 429.3
GTEX-13O3O-3126-SM-5KM3H 420.8
GTEX-139T8-1026-SM-5J2MC 419.1
GTEX-R55F-1326-SM-5S2V4 416.9
GTEX-145MG-3026-SM-5RQJA 415.5
GTEX-XLM4-3026-SM-4AT6L 415.3
GTEX-13O3Q-2926-SM-5KM45 412.9
GTEX-13OVH-3026-SM-5MR4N 411.2
GTEX-14BMV-3026-SM-5S2PQ 409.4
GTEX-Q2AG-2926-SM-2HMJ3 407.7
GTEX-11NUK-2926-SM-5A5MD 406.7
GTEX-RU72-3026-SM-5SI7Y 400.5
GTEX-YJ89-3026-SM-5IFJI 398.5
GTEX-1128S-2726-SM-5H12C 396.0
GTEX-145LS-3126-SM-5Q5BY 395.9
GTEX-14ASI-3026-SM-5S2PN 395.7
GTEX-OXRN-2426-SM-2I5EQ 392.8
GTEX-Y111-2726-SM-4TT3N 392.0
GTEX-13QIC-2926-SM-5J2NF 389.9
GTEX-13OW6-3026-SM-5J2MI 383.2
GTEX-13NYB-3026-SM-5IJD7 380.1
GTEX-13X6J-3026-SM-5Q5CU 372.1
GTEX-11DXY-3226-SM-5GIDE 369.2
GTEX-11EI6-3026-SM-5GZZO 368.4
GTEX-ZYFD-3026-SM-5E44C 368.0
GTEX-11PRG-2926-SM-5987A 367.1
GTEX-13FHP-3026-SM-5IJBS 365.9
GTEX-QVJO-1426-SM-2S1QY 363.7
GTEX-11WQK-3026-SM-5EQL6 360.2
GTEX-Y8DK-0826-SM-4TT3T 358.3
GTEX-ZAK1-3026-SM-5S2MJ 358.0
GTEX-12ZZZ-3026-SM-5BC67 356.8
GTEX-11NV4-2126-SM-5N9DS 356.6
GTEX-11DXW-1126-SM-5H12Q 355.7
GTEX-X585-3026-SM-46MWF 355.3
GTEX-11GS4-3126-SM-5A5LH 355.1
GTEX-12WSC-3026-SM-5GCNF 350.5
GTEX-13JUV-2926-SM-5LZX7 348.0
GTEX-1192X-3126-SM-5N9BY 344.3
GTEX-WHSE-3026-SM-3P5ZH 343.8
GTEX-13SLX-3126-SM-5S2Q5 341.9
GTEX-12ZZY-3026-SM-5GCOU 341.6
GTEX-QMR6-1426-SM-32PLA 340.8
GTEX-12ZZX-2926-SM-5GCOQ 340.6
GTEX-13PVQ-3026-SM-5SI93 340.0
GTEX-147GR-3026-SM-5S2ML 339.6
GTEX-XOTO-3026-SM-4B65M 339.5
GTEX-WVLH-3026-SM-3MJG9 338.0
GTEX-13IVO-2926-SM-5L3CZ 335.5
GTEX-131YS-3126-SM-5KLYT 334.4
GTEX-YFC4-3126-SM-5PNV6 332.8
GTEX-13NYC-2826-SM-5K7WR 331.1
GTEX-TSE9-3026-SM-3DB76 330.1
GTEX-ZUA1-3026-SM-59HJC 328.2
GTEX-RNOR-2326-SM-2TF4I 321.5
GTEX-145MH-3026-SM-5Q5DZ 319.4
GTEX-T6MN-2626-SM-32PMQ 317.8
GTEX-12WSA-2926-SM-5EQ4D 313.0
GTEX-12126-1026-SM-5P9JJ 311.3
GTEX-111FC-3126-SM-5GZZ2 309.9
GTEX-13NYS-3126-SM-5KLYV 308.9
GTEX-QDT8-2926-SM-32PKC 308.9
GTEX-13FLW-1426-SM-5K7YE 307.8
GTEX-T5JC-2426-SM-3NMDB 303.4
GTEX-132Q8-3026-SM-5PNVG 302.5
GTEX-13VXU-2926-SM-5LU5C 298.6
GTEX-T2IS-3026-SM-32QPM 298.3
GTEX-12WSH-3026-SM-5CVNI 297.6
GTEX-WWYW-3126-SM-3NB39 294.0
GTEX-117XS-3026-SM-5N9CA 292.8
GTEX-NPJ7-2726-SM-2I3FT 283.1
GTEX-1313W-3126-SM-5LZUI 277.4
GTEX-13PL6-3126-SM-5LUAR 277.4
GTEX-WZTO-2926-SM-3NM9I 275.5
GTEX-11O72-2926-SM-5BC4V 273.8
GTEX-X4XX-3026-SM-3NMB2 272.2
GTEX-11ZUS-2926-SM-5FQSL 251.1
GTEX-Z93S-2926-SM-57WB9 234.5
GTEX-UTHO-3026-SM-3GAFB 231.6
GTEX-NPJ8-1526-SM-2D7VU 215.0
GTEX-WL46-2926-SM-3LK82 214.6
GTEX-PVOW-2526-SM-2XCF7 214.2
GTEX-13G51-3026-SM-5IJB8 212.1
GTEX-ZZPT-3026-SM-5GZXH 211.7
GTEX-144FL-3026-SM-5O99C 205.0
GTEX-N7MT-1126-SM-5SI7V 204.5
GTEX-ZAJG-3126-SM-5HL9J 199.1
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 346.8
Samples: 108

Max RPKM: 767.3
Min RPKM: 145.6
Std RPKM: 100.9
Median RPKM: 323.3
GTEX-13OVJ-0011-R10b-SM-5L3HT 767.3
GTEX-1445S-0011-R10a-SM-5PNWB 655.5
GTEX-12WSD-0011-R10b-SM-5GU79 586.3
GTEX-ZV68-0011-R10a-SM-51MT7 576.2
GTEX-13OW8-0011-R10a-SM-5L3H6 535.2
GTEX-14753-0011-R10b-SM-5S2WE 519.5
GTEX-11H98-0011-R10b-SM-5NQ98 493.7
GTEX-14BIL-0011-R10a-SM-5SI75 489.3
GTEX-11WQC-0011-R10a-SM-57WCT 482.3
GTEX-13FHO-0011-R10b-SM-5J2MM 479.8
GTEX-131XW-0011-R10a-SM-5DUVA 469.2
GTEX-13FXS-0011-R10a-SM-5J2MA 467.2
GTEX-1477Z-0011-R10b-SM-5S2RF 464.6
GTEX-13JUV-0011-R10b-SM-5LZXR 461.5
GTEX-11GSP-0011-R10a-SM-5NQ7J 451.7
GTEX-145LU-0011-R10a-SM-5PNWJ 444.6
GTEX-TSE9-0011-R10A-SM-3DB7O 441.7
GTEX-13O3O-0011-R10a-SM-5LUA9 433.5
GTEX-13RTJ-0011-R10b-SM-5O9CW 428.1
GTEX-RVPU-0011-R10A-SM-2XCAH 422.0
GTEX-OXRO-0011-R10A-SM-2I5EH 419.9
GTEX-14ASI-0011-R10b-SM-5S2VZ 416.4
GTEX-139TS-0011-R10a-SM-5K7TU 416.0
GTEX-ZAB4-0011-R10a-SM-4SOKH 408.0
GTEX-12ZZW-0011-R10b-SM-5HL9X 406.2
GTEX-13X6K-0011-R10a-SM-5P9JR 406.1
GTEX-13CZV-0011-R10b-SM-5LZYD 403.6
GTEX-147F4-0011-R10b-SM-5S2WC 403.3
GTEX-XLM4-0011-R10A-SM-4AT5P 399.1
GTEX-P44H-0011-R10A-SM-2XCEK 394.6
GTEX-12WSM-0011-R10a-SM-5DUWV 392.1
GTEX-13FLV-0011-R10b-SM-5LZZ2 391.5
GTEX-13OVL-0011-R10a-SM-5L3GS 390.4
GTEX-13SLW-0011-R10a-SM-5S2UI 390.2
GTEX-12ZZY-0011-R10b-SM-5HL7W 390.1
GTEX-13NYB-0011-R10a-SM-5KM43 384.0
GTEX-147GR-0011-R10b-SM-5S2UM 382.6
GTEX-145MG-0011-R10a-SM-5PNWG 380.8
GTEX-13OW6-0011-R10a-SM-5L3HE 376.0
GTEX-13FTZ-0011-R10b-SM-5KLZS 372.5
GTEX-13NYS-0011-R10a-SM-5MR4S 372.3
GTEX-13S7M-0011-R10b-SM-5PNZB 372.0
GTEX-13JVG-0011-R10b-SM-5KM2P 371.6
GTEX-13OW7-0011-R10a-SM-5L3H3 367.1
GTEX-145LS-0011-R10a-SM-5PNUQ 367.0
GTEX-12ZZZ-0011-R10a-SM-5P9HC 358.2
GTEX-ZUA1-0011-R10a-SM-51MT6 348.0
GTEX-14BIN-0011-R10a-SM-5S2UA 347.2
GTEX-13O3Q-0011-R10b-SM-5KM39 345.3
GTEX-12WSA-0011-R10b-SM-5P9ET 340.5
GTEX-13X6I-0011-R10a-SM-5PNWI 336.2
GTEX-N7MT-0011-R10A-SM-2I3E1 336.2
GTEX-13QJC-0011-R10a-SM-5SI63 325.7
GTEX-ZVT3-0011-R10b-SM-57WB6 323.5
GTEX-131YS-0011-R10b-SM-5EQ5N 323.0
GTEX-13SLX-0011-R10a-SM-5P9HV 322.4
GTEX-OXRN-0011-R10A-SM-2I5GC 321.6
GTEX-13NZA-0011-R10b-SM-5KM54 321.2
GTEX-ZF28-0011-R10a-SM-4WWEH 318.9
GTEX-13N1W-0011-R10b-SM-5MR4H 316.6
GTEX-12WSF-0011-R10a-SM-5LZVH 314.4
GTEX-13QIC-0011-R10a-SM-5O9C7 311.9
GTEX-13X6J-0011-R10b-SM-5PNWA 308.9
GTEX-12WSC-0011-R10a-SM-5GU57 308.3
GTEX-Q2AG-0011-R10A-SM-2HMLA 305.7
GTEX-13G51-0011-R10b-SM-5LZYF 301.9
GTEX-N7MS-0011-R10A-SM-2HMJK 301.5
GTEX-ZXG5-0011-R10a-SM-57WDD 301.0
GTEX-11WQK-0011-R10a-SM-5BC6R 300.8
GTEX-X585-0011-R10A-SM-46MUY 300.2
GTEX-Y8DK-0011-R10A-SM-4SOK1 296.2
GTEX-T6MN-0011-R10A-SM-32QP7 295.6
GTEX-QVUS-0011-R10A-SM-3GIK3 295.4
GTEX-131XH-0011-R10a-SM-5EGLJ 295.2
GTEX-132Q8-0011-R10b-SM-5DUWZ 295.1
GTEX-12126-0011-R10b-SM-5BC6T 294.8
GTEX-QMR6-0011-R10A-SM-32PKO 291.5
GTEX-ZDXO-0011-R10a-SM-4WWD8 290.0
GTEX-T5JC-0011-R10A-SM-32PM2 289.6
GTEX-S7SE-0011-R10A-SM-2XCDF 282.9
GTEX-YJ89-0011-R10a-SM-4SOK9 277.2
GTEX-NL4W-0011-R10A-SM-2I3DY 276.5
GTEX-X261-0011-R10B-SM-4E3JT 275.5
GTEX-12WSH-0011-R10a-SM-5LZUS 274.4
GTEX-ZVZQ-0011-R10b-SM-51MRT 270.4
GTEX-145MH-0011-R10b-SM-5PNUK 269.0
GTEX-YFC4-0011-R10a-SM-4SOK5 263.9
GTEX-NL3H-0011-R10A-SM-2I3E9 258.0
GTEX-12WSE-0011-R10b-SM-5P9JV 254.0
GTEX-X4EP-0011-R10B-SM-4QASJ 253.4
GTEX-WVLH-0011-R10A-SM-3MJFM 251.6
GTEX-WZTO-0011-R10B-SM-4E3KB 249.3
GTEX-NPJ7-0011-R10A-SM-2I3E5 247.5
GTEX-12ZZX-0011-R10b-SM-5DUWK 242.8
GTEX-X4XX-0011-R10B-SM-46MWO 242.1
GTEX-13FLW-0011-R10b-SM-5LZZF 236.2
GTEX-1313W-0011-R10b-SM-5DUXA 234.8
GTEX-Z93S-0011-R10a-SM-4RGNM 232.7
GTEX-13N2G-0011-R10a-SM-5MR34 230.6
GTEX-QVJO-0011-R10A-SM-2S1QJ 224.1
GTEX-QDT8-0011-R10A-SM-32PKG 223.9
GTEX-WWYW-0011-R10A-SM-3NB35 222.9
GTEX-NPJ8-0011-R10A-SM-2YUMO 208.5
GTEX-13IVO-0011-R10a-SM-5LZY3 203.3
GTEX-WL46-0011-R10A-SM-3MJFQ 198.6
GTEX-11ZUS-0011-R10b-SM-5BC79 193.9
GTEX-XMD1-0011-R10A-SM-4AT4A 187.1
GTEX-ZE7O-0011-R10a-SM-57WAZ 145.6
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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