Fields »
ABOUT
HELP
BLOG
ALDOC

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.4TPM
GTEx:7.5RPKM
FANTOM5:15.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA003282

  

Antibody CAB020828

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

13.4
overview Male, age 54
Sample 1
TPM: 13.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 18.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 10.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 8.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 7.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 7.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 9.0
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 14.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 13.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 8.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 43.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 11.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 8.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.5

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 7.8
Samples: 149

Max RPKM: 24.1
Min RPKM: 2.8
Std RPKM: 3
Median RPKM: 7.4
GTEX-ZAB4-2426-SM-5HL8A 24.1
GTEX-12ZZW-2426-SM-5DUWE 23.0
GTEX-148VJ-2426-SM-5NQ9Y 22.1
GTEX-1399U-2226-SM-5KLZI 16.5
GTEX-13X6K-2726-SM-5O9DG 12.7
GTEX-11DXZ-1626-SM-5GIDI 12.1
GTEX-14A5I-2426-SM-5Q5CP 11.6
GTEX-WFON-1326-SM-4LVMN 11.6
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 7.2
Samples: 196

Max RPKM: 23.3
Min RPKM: 2
Std RPKM: 3.5
Median RPKM: 6.2
GTEX-R55G-1226-SM-48FDC 23.3
GTEX-ZV7C-1526-SM-5NQ72 22.8
GTEX-YB5E-1626-SM-5IFIQ 17.7
GTEX-13O21-2426-SM-5MR4A 16.9
GTEX-1122O-1526-SM-5N9CL 16.8
GTEX-13VXT-2426-SM-5LU46 15.2
GTEX-XV7Q-2126-SM-4BRVX 14.6
GTEX-ZAB4-2226-SM-5HL97 13.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

15.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 15.1
FF:10014-101C5 62,83,84 years, mixed 15.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.