We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ALDOC
  • premium

    TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA SMALL INTESTINE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:48.1TPM
GTEx:18.0RPKM
FANTOM5:24.8Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:Low
 

Antibody staining

Antibody HPA003282

 

Antibody CAB020828

 

Glandular cells

Low   Low  
   
   
   

SMALL INTESTINE - HPA RNA-seq

Average TPM

48.1

overview Male, age 65
Sample 1
TPM: 30.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 107.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 22.8
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 31.7

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

18.0

GTEx sample id

RPKM

 

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 18.0
Samples: 88

Max RPKM: 67.8
Min RPKM: 3.9
Std RPKM: 10.7
Median RPKM: 15.1
GTEX-111YS-1426-SM-5GID8 67.8
GTEX-YB5E-1526-SM-5IFIE 52.4
GTEX-ZTSS-0926-SM-59865 46.0
GTEX-1122O-1326-SM-5H11F 40.6
GTEX-ZYFG-2026-SM-5E43Y 38.8
GTEX-Y9LG-1626-SM-5IFHM 36.4
GTEX-XUZC-1426-SM-4BRV3 33.9
GTEX-ZLV1-1126-SM-4WWBW 33.0
GTEX-11DXX-1626-SM-5H11H 32.4
GTEX-ZTPG-2626-SM-57WFX 31.5
GTEX-11P7K-1626-SM-5GU63 31.1
GTEX-XXEK-1026-SM-4BRUW 30.4
GTEX-13PL7-2626-SM-5IFH4 30.3
GTEX-11DXZ-1326-SM-5H11X 27.6
GTEX-ZZ64-0526-SM-5GZXM 25.1
GTEX-14E6E-1626-SM-5RQI7 23.6
GTEX-X5EB-1626-SM-4E3IV 23.5
GTEX-WFJO-0926-SM-4LVM2 23.4
GTEX-131XF-1326-SM-5GCMQ 22.6
GTEX-ZXES-1526-SM-5NQ95 22.6
GTEX-11P82-0826-SM-5P9GU 22.4
GTEX-YF7O-1826-SM-5IFIU 21.5
GTEX-ZPCL-1726-SM-57WEO 21.2
GTEX-ZEX8-1826-SM-57WBH 20.8
GTEX-ZTX8-0526-SM-59HLD 20.7
GTEX-ZVZP-1826-SM-5GZXB 20.7
GTEX-WQUQ-2426-SM-4MVNW 19.4
GTEX-YEC4-1726-SM-4W21E 19.0
GTEX-ZYWO-1526-SM-5SIAL 18.8
GTEX-XBED-1426-SM-4AT4G 18.7
GTEX-ZQUD-0926-SM-57WE3 18.6
GTEX-1399S-2026-SM-5KM4B 18.6
GTEX-13D11-0726-SM-5LZZB 18.3
GTEX-11NSD-1726-SM-5N9C3 17.9
GTEX-UPK5-2026-SM-4JBIM 17.7
GTEX-XAJ8-0526-SM-47JYK 17.4
GTEX-11XUK-1426-SM-5EQMG 16.6
GTEX-14DAR-1426-SM-5RQIR 16.6
GTEX-11I78-1126-SM-5A5K5 16.5
GTEX-WFG7-1726-SM-4LVME 16.3
GTEX-Y114-1426-SM-4TT6W 15.3
GTEX-13CF3-1226-SM-5LZXN 15.2
GTEX-11EQ9-1326-SM-5985X 15.1
GTEX-X15G-1426-SM-4PQZK 15.1
GTEX-145LT-1026-SM-5LU9O 15.1
GTEX-117YX-0326-SM-5GICL 15.0
GTEX-Y3IK-1726-SM-4YCCR 15.0
GTEX-1399R-2026-SM-5K7WN 14.7
GTEX-13FH7-1226-SM-5IJFK 14.6
GTEX-12BJ1-1926-SM-5HL9Z 14.6
GTEX-133LE-1426-SM-5IFH1 13.9
GTEX-13113-1226-SM-5EGHT 13.7
GTEX-WEY5-1526-SM-4LMJF 13.6
GTEX-13O61-1326-SM-5KM31 13.3
GTEX-13O21-1026-SM-5IJDU 13.2
GTEX-1192X-2526-SM-59868 13.1
GTEX-XGQ4-1326-SM-4GIDU 13.1
GTEX-ZA64-1226-SM-5HL7B 13.0
GTEX-Z9EW-0926-SM-5CVMM 12.6
GTEX-12WSK-1526-SM-5CVNO 12.2
GTEX-VUSG-1726-SM-4KKZL 12.0
GTEX-XMK1-1826-SM-4B66F 11.8
GTEX-ZVT2-2126-SM-5NQ93 11.6
GTEX-ZP4G-1626-SM-57WGD 11.3
GTEX-139YR-2226-SM-5IFFW 11.2
GTEX-ZLFU-1526-SM-4WWBT 11.1
GTEX-139T6-1026-SM-5IJGC 11.0
GTEX-ZF2S-1726-SM-57WFT 10.8
GTEX-ZPIC-2326-SM-57WDW 10.6
GTEX-13111-1426-SM-5DUW3 10.4
GTEX-WFG8-1626-SM-4LVMB 9.7
GTEX-ZVP2-1726-SM-5GU5P 9.7
GTEX-13FTW-2026-SM-5IJE2 9.6
GTEX-11VI4-1626-SM-5EQKO 9.4
GTEX-111CU-1326-SM-5NQ8L 9.4
GTEX-WH7G-1626-SM-4LVMY 9.2
GTEX-13QBU-1926-SM-5IJEW 9.1
GTEX-131XG-1726-SM-5LZUR 8.9
GTEX-13RTK-0826-SM-5Q5C6 8.8
GTEX-WRHK-1026-SM-4MVOD 8.5
GTEX-ZC5H-2326-SM-4WAYT 8.1
GTEX-ZQG8-2526-SM-57WEQ 7.6
GTEX-Y5LM-1626-SM-4VDTB 6.6
GTEX-145ME-0926-SM-5O9AR 6.3
GTEX-1399U-2126-SM-5IFEZ 6.1
GTEX-VJYA-0926-SM-4KL1N 4.6
GTEX-13OVI-1926-SM-5IJCG 4.2
GTEX-148VJ-2226-SM-5NQ9M 3.9
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

24.8

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 24.8
FF:10024-101D6 15,40,85 years, mixed 24.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.