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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:97.7TPM
GTEx:21.3RPKM
FANTOM5:82.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA036656

  

Antibody HPA036657

  

Antibody CAB034444

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 High   High   High  

Peripheral nerve/ganglion

 Not detected  
        
     
     
     

COLON - HPA RNA-seq

Average TPM

97.7
overview Male, age 54
Sample 1
TPM: 48.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 96.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 127.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 200.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 52.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 76.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 132.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 111.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 54.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 91.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 92.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 102.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 82.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.3

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 7.2
Samples: 149

Max RPKM: 74.6
Min RPKM: 3.5
Std RPKM: 5.9
Median RPKM: 6.2
GTEX-14C39-1626-SM-5S2P4 74.6
GTEX-XBED-1726-SM-47JYO 15.6
GTEX-13X6I-2726-SM-5Q5ET 14.4
GTEX-Y5LM-1426-SM-5RQJL 14.2
GTEX-13OVJ-1826-SM-5KM2D 13.3
GTEX-YJ8A-1726-SM-5P9IQ 13.3
GTEX-132AR-2826-SM-5IJFV 12.7
GTEX-12ZZW-2426-SM-5DUWE 11.9
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 32.0
Samples: 196

Max RPKM: 128.3
Min RPKM: 4.1
Std RPKM: 21.8
Median RPKM: 30.7
GTEX-11P82-1026-SM-5BC5J 128.3
GTEX-ZT9W-1826-SM-51MQX 98.0
GTEX-11TT1-1026-SM-5PNW7 97.5
GTEX-11EM3-1526-SM-5A5KN 79.1
GTEX-12BJ1-2126-SM-5BC5O 78.8
GTEX-Q2AI-0926-SM-48U1F 77.2
GTEX-R55D-1826-SM-48FEF 73.5
GTEX-1399R-2226-SM-5P9JB 72.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

82.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 82.0
FF:10014-101C5 62,83,84 years, mixed 82.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.