We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
PTPN6
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA KIDNEY

GENE/PROTEIN

Antibody validation


Dictionary

Kidney

Tissue proteome

Kidney

KIDNEY - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:8.6TPM
GTEx:11.7RPKM
FANTOM5:16.8Tags Per Million

KIDNEY - Annotated protein expression

Annotated protein
expression

Cells in glomeruli:Not detected
Cells in tubules:Not detected
 

Antibody staining

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 

Cells in glomeruli

Not detected   Not detected   Not detected  

Cells in tubules

Low   Not detected   Medium  
     
     
     

KIDNEY - HPA RNA-seq

Average TPM

8.6

overview Female, age 58
Sample 1
TPM: 12.6
Cell types%
Cells in tubules: 60
Cells in glomeruli: 20
Fibroblasts: 5
Other cell types: 15
overview Female, age 67
Sample 2
TPM: 11.8
Cell types%
Cells in tubules: 70
Cells in glomeruli: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 55
Sample 3
TPM: 15.2
Cell types%
Cells in tubules: 80
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 5
overview Male, age 46
Sample 4
TPM: 11.9
Cell types%
Cells in tubules: 60
Cells in glomeruli: 25
Fibroblasts: 5
Other cell types: 10
overview Female, age 57
Sample 5
TPM: 1.8
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 6
TPM: 6.2
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 20
overview Male, age 73
Sample 7
TPM: 5.8
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Female, age 59
Sample 8
TPM: 7.8
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 15
overview Female, age 48
Sample 9
TPM: 3.9
Cell types%
Cells in tubules: 60
Cells in glomeruli: 5
Fibroblasts: 10
Other cell types: 25

KIDNEY - GTEx RNA-seq

Average RPKM

11.7

GTEx sample id

RPKM

 

Kidney - Cortex

Kidney - Cortex
RPKM: 11.7
Samples: 32

Max RPKM: 37.4
Min RPKM: 3.4
Std RPKM: 6.9
Median RPKM: 9.7
GTEX-1399S-0526-SM-5IJG8 37.4
GTEX-ZVZP-0926-SM-5GIDB 24.3
GTEX-13OVI-1126-SM-5KLZF 24.1
GTEX-ZLFU-0926-SM-5P9F8 23.3
GTEX-RN64-1626-SM-48FD7 15.8
GTEX-13112-2126-SM-5GCO4 14.8
GTEX-145MN-0326-SM-5QGQI 14.5
GTEX-ZYFG-1626-SM-5GZYY 14.2
GTEX-12696-0926-SM-5FQTV 13.6
GTEX-QLQW-1626-SM-4R1K1 12.5
GTEX-ZYT6-2226-SM-5GIC9 12.2
GTEX-UPIC-1126-SM-4IHLO 12.0
GTEX-XPVG-0526-SM-4B65N 11.8
GTEX-147F4-2626-SM-5Q5CS 11.1
GTEX-11GS4-2326-SM-5A5KS 10.1
GTEX-1497J-0826-SM-5NQAJ 9.8
GTEX-12WSG-0826-SM-5EQ5A 9.6
GTEX-QDVN-1626-SM-48TZC 9.4
GTEX-13RTJ-2226-SM-5S2Q1 9.2
GTEX-13OVL-1826-SM-5KLZR 8.9
GTEX-13O1R-2526-SM-5N9FW 8.7
GTEX-P4QS-1126-SM-3NMD5 8.4
GTEX-ZC5H-1726-SM-5HL7X 7.8
GTEX-NPJ8-2226-SM-3TW8D 7.1
GTEX-11OF3-1326-SM-5N9FJ 6.5
GTEX-Y5V6-2026-SM-5IFHO 6.5
GTEX-13NYB-1726-SM-5N9G2 6.1
GTEX-N7MS-1626-SM-3LK5F 5.9
GTEX-13OW6-1826-SM-5N9F9 5.8
GTEX-11TTK-1926-SM-5PNW8 5.7
GTEX-ZYFD-1526-SM-5NQ7T 4.0
GTEX-T5JC-1526-SM-4DM68 3.4
Show all

KIDNEY - FANTOM5 CAGE

Average Tags Per Million

16.8

FANTOM5 sample id

Sample description

Tags Per Million

Kidney
Tags Per Million: 16.8
FF:10017-101C8 60,62,63 years, female 16.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.