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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:25.5RPKM
FANTOM5:82.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:High
 

Antibody staining

Antibody HPA050530

 

Antibody HPA054147

 

Glial cells

Low   Not detected  

Neuronal cells

High   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

25.5

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 25.5
Samples: 117

Max RPKM: 101.8
Min RPKM: 1.4
Std RPKM: 16.2
Median RPKM: 24.2
GTEX-T2IS-0011-R5A-SM-32QP4 101.8
GTEX-PVOW-0011-R5A-SM-32PL7 66.8
GTEX-131YS-0011-R5b-SM-5K7YB 57.3
GTEX-1313W-0011-R5b-SM-5L3EP 49.5
GTEX-1399T-0011-R5b-SM-5IJDK 48.4
GTEX-145MH-0011-R5a-SM-5P9JT 48.3
GTEX-13G51-0011-R5a-SM-5L3EB 47.3
GTEX-13X6J-0011-R5b-SM-5PNWT 46.8
GTEX-14ABY-0011-R5b-SM-5SI7B 46.1
GTEX-139TT-0011-R5b-SM-5K7W8 45.9
GTEX-WVLH-0011-R5A-SM-3MJFW 45.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 45.5
GTEX-WWYW-0011-R5A-SM-3NB3E 45.1
GTEX-12WSC-0011-R5b-SM-5CVNS 44.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 44.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 43.9
GTEX-WZTO-0011-R5B-SM-3NMC5 42.9
GTEX-WL46-0011-R5A-SM-3LK6V 42.3
GTEX-P44H-0011-R5A-SM-2XCEX 41.0
GTEX-N7MS-0011-R5a-SM-2HMK8 40.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40.1
GTEX-S7SE-0011-R5A-SM-2XCDA 40.1
GTEX-145LS-0011-R5a-SM-5SI65 39.8
GTEX-QVJO-0011-R5A-SM-2S1QM 39.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 39.7
GTEX-13SLX-0011-R5a-SM-5O9BV 39.7
GTEX-13VXU-0011-R5a-SM-5O9D7 38.3
GTEX-T5JC-0011-R5A-SM-32PLK 38.3
GTEX-11GSP-0011-R5a-SM-57WBE 37.3
GTEX-Z93S-0011-R5b-SM-4RGNI 37.3
GTEX-11OF3-0011-R5a-SM-57WB4 36.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 36.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 36.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 35.5
GTEX-12WSF-0011-R5a-SM-5HL8K 35.3
GTEX-13OVL-0011-R5b-SM-5L3FU 35.3
GTEX-T6MN-0011-R5A-SM-32QPD 35.3
GTEX-13FXS-0011-R5b-SM-5LZYE 34.9
GTEX-13O3O-0011-R5b-SM-5KM44 34.7
GTEX-11NV4-0011-R5a-SM-5NQ88 33.6
GTEX-N7MT-0011-R5a-SM-2I3G6 33.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 31.5
GTEX-RVPU-0011-R5A-SM-2XCAD 31.0
GTEX-ZUA1-0011-R5b-SM-51MTG 30.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 30.6
GTEX-14BIM-0011-R5b-SM-5S2RM 30.2
GTEX-R55E-0011-R5A-SM-2TC5N 29.6
GTEX-13OW6-0011-R5a-SM-5O9BK 29.2
GTEX-13FLW-0011-R5a-SM-5LZX6 29.0
GTEX-RU72-0011-R5A-SM-2TF6U 28.9
GTEX-UTHO-0011-R5A-SM-3GIJD 28.7
GTEX-12WSD-0011-R5b-SM-5CVNG 26.7
GTEX-13OW7-0011-R5b-SM-5O9DM 25.2
GTEX-X585-0011-R5A-SM-46MVI 25.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 25.0
GTEX-11H98-0011-R5b-SM-57WCF 24.9
GTEX-13S7M-0011-R5b-SM-5P9HS 24.3
GTEX-13X6K-0011-R5b-SM-5PNUE 24.3
GTEX-TSE9-0011-R5A-SM-3DB7J 24.2
GTEX-ZE7O-0011-R5a-SM-57WBO 23.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 23.4
GTEX-13CZV-0011-R5a-SM-5K7XA 23.2
GTEX-13X6I-0011-R5a-SM-5PNWW 23.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 21.7
GTEX-YFC4-0011-R5a-SM-4RGLR 21.4
GTEX-132Q8-0011-R5a-SM-5IJDM 21.0
GTEX-RVPV-0011-R5A-SM-2TF69 20.2
GTEX-13FLV-0011-R5a-SM-5LZWT 19.6
GTEX-13NYS-0011-R5a-SM-5MR4D 19.2
GTEX-NL3H-0011-R5a-SM-2I3GB 18.4
GTEX-12WSB-0011-R5b-SM-5GU67 18.0
GTEX-14BIN-0011-R5b-SM-5SI78 17.8
GTEX-NL4W-0011-R5a-SM-2I3GD 17.1
GTEX-XOTO-0011-R5A-SM-4B657 17.0
GTEX-12ZZX-0011-R5a-SM-5HL89 16.7
GTEX-XMD1-0011-R5A-SM-4AT47 16.6
GTEX-13NYB-0011-R5a-SM-5MR45 16.5
GTEX-13OW5-0011-R5b-SM-5L3FR 16.5
GTEX-13JUV-0011-R5a-SM-5LZY5 16.4
GTEX-13OVH-0011-R5b-SM-5KM4L 16.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 15.3
GTEX-QMR6-0011-R5A-SM-32PKT 15.0
GTEX-OHPN-0011-R5A-SM-2I5FF 13.5
GTEX-ZXG5-0011-R5b-SM-57WBN 13.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 12.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 12.5
GTEX-OXRN-0011-R5A-SM-2I5EF 12.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 12.0
GTEX-YJ89-0011-R5a-SM-4V6GM 12.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 11.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 11.2
GTEX-11WQC-0011-R5a-SM-5BC74 11.0
GTEX-12WSA-0011-R5b-SM-5GU5I 10.9
GTEX-144GO-0011-R5a-SM-5PNUR 9.8
GTEX-13JVG-0011-R5a-SM-5MR4O 9.4
GTEX-X4XX-0011-R5A-SM-46MWN 9.2
GTEX-12WSH-0011-R5b-SM-5P9F3 9.0
GTEX-13CIG-0011-R5b-SM-5L3F2 8.9
GTEX-ZVT3-0011-R5a-SM-51MSI 8.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 7.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 7.8
GTEX-139TS-0011-R5b-SM-5J2MZ 7.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 7.3
GTEX-13112-0011-R5b-SM-5DUV8 6.5
GTEX-ZV68-0011-R5a-SM-4YCDW 6.2
GTEX-144GL-0011-R5b-SM-5PNUJ 6.0
GTEX-X261-0011-R5A-SM-3NMB4 5.7
GTEX-13FHP-0011-R5b-SM-5LZY2 5.1
GTEX-NPJ7-0011-R5a-SM-33HBK 4.7
GTEX-1477Z-0011-R5b-SM-5PNUO 3.7
GTEX-1445S-0011-R5a-SM-5PNUS 3.5
GTEX-S7PM-0011-R5A-SM-3NM8G 3.2
GTEX-13CF2-0011-R5a-SM-5LZWS 3.0
GTEX-145MG-0011-R5b-SM-5S2VU 2.2
GTEX-11UD1-0011-R5b-SM-5P9FP 2.1
GTEX-13NZA-0011-R5b-SM-5KM4K 2.1
GTEX-139T8-0011-R5b-SM-5J1MO 1.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

82.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 82.3
FF:10379-105H1 89 years, female 100.1
FF:10164-103B2 76 years, female 64.5

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