We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
QKI
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:31.8RPKM
FANTOM5:465.8Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA019123

 

Antibody CAB022602

 

Glial cells

High   High  

Neuronal cells

Not detected   Not detected  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

31.8

GTEx sample id

RPKM

25.731.135.114.446.005101520253035404550556065
 
25.731.135.114.446.005101520253035404550556065

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 31.8
Samples: 117

Max RPKM: 66.4
Min RPKM: 14.4
Std RPKM: 9.3
Median RPKM: 31.1
GTEX-12WSA-0011-R5b-SM-5GU5I 66.4
GTEX-QMR6-0011-R5A-SM-32PKT 65.8
GTEX-X4XX-0011-R5A-SM-46MWN 62.1
GTEX-12WSB-0011-R5b-SM-5GU67 59.2
GTEX-PVOW-0011-R5A-SM-32PL7 58.2
GTEX-11WQC-0011-R5a-SM-5BC74 50.8
GTEX-WWYW-0011-R5A-SM-3NB3E 46.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 45.4
GTEX-13X6I-0011-R5a-SM-5PNWW 44.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 44.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 42.8
GTEX-N7MS-0011-R5a-SM-2HMK8 41.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 41.0
GTEX-1445S-0011-R5a-SM-5PNUS 41.0
GTEX-13JVG-0011-R5a-SM-5MR4O 40.3
GTEX-144GO-0011-R5a-SM-5PNUR 39.8
GTEX-R55E-0011-R5A-SM-2TC5N 38.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 38.6
GTEX-13FLV-0011-R5a-SM-5LZWT 38.0
GTEX-NL4W-0011-R5a-SM-2I3GD 38.0
GTEX-ZXG5-0011-R5b-SM-57WBN 37.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 36.7
GTEX-NPJ7-0011-R5a-SM-33HBK 36.5
GTEX-XMD1-0011-R5A-SM-4AT47 36.5
GTEX-ZV68-0011-R5a-SM-4YCDW 36.5
GTEX-WVLH-0011-R5A-SM-3MJFW 36.1
GTEX-YFC4-0011-R5a-SM-4RGLR 36.1
GTEX-P44H-0011-R5A-SM-2XCEX 35.3
GTEX-QVJO-0011-R5A-SM-2S1QM 35.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 35.1
GTEX-Z93S-0011-R5b-SM-4RGNI 35.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 34.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 34.8
GTEX-13FHP-0011-R5b-SM-5LZY2 34.6
GTEX-13OW6-0011-R5a-SM-5O9BK 34.6
GTEX-11H98-0011-R5b-SM-57WCF 34.5
GTEX-X261-0011-R5A-SM-3NMB4 34.5
GTEX-ZVT3-0011-R5a-SM-51MSI 34.4
GTEX-WZTO-0011-R5B-SM-3NMC5 34.2
GTEX-144GL-0011-R5b-SM-5PNUJ 34.0
GTEX-ZE7O-0011-R5a-SM-57WBO 33.9
GTEX-139TS-0011-R5b-SM-5J2MZ 33.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 33.2
GTEX-13112-0011-R5b-SM-5DUV8 32.9
GTEX-WL46-0011-R5A-SM-3LK6V 32.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 32.6
GTEX-S7PM-0011-R5A-SM-3NM8G 32.3
GTEX-11GSP-0011-R5a-SM-57WBE 32.1
GTEX-14BIN-0011-R5b-SM-5SI78 32.0
GTEX-13OVH-0011-R5b-SM-5KM4L 31.8
GTEX-139TT-0011-R5b-SM-5K7W8 31.6
GTEX-13NYS-0011-R5a-SM-5MR4D 31.6
GTEX-OHPN-0011-R5A-SM-2I5FF 31.5
GTEX-13OW7-0011-R5b-SM-5O9DM 31.4
GTEX-NL3H-0011-R5a-SM-2I3GB 31.4
GTEX-N7MT-0011-R5a-SM-2I3G6 31.3
GTEX-13NYB-0011-R5a-SM-5MR45 31.2
GTEX-13O3O-0011-R5b-SM-5KM44 31.1
GTEX-RVPV-0011-R5A-SM-2TF69 31.1
GTEX-ZUA1-0011-R5b-SM-51MTG 31.1
GTEX-145LS-0011-R5a-SM-5SI65 31.0
GTEX-OXRN-0011-R5A-SM-2I5EF 30.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 30.8
GTEX-11NV4-0011-R5a-SM-5NQ88 30.3
GTEX-11UD1-0011-R5b-SM-5P9FP 29.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 29.7
GTEX-XOTO-0011-R5A-SM-4B657 29.6
GTEX-13CIG-0011-R5b-SM-5L3F2 29.3
GTEX-13OW5-0011-R5b-SM-5L3FR 29.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 28.9
GTEX-13OVL-0011-R5b-SM-5L3FU 28.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 28.8
GTEX-T6MN-0011-R5A-SM-32QPD 28.8
GTEX-12WSD-0011-R5b-SM-5CVNG 28.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 28.5
GTEX-131YS-0011-R5b-SM-5K7YB 28.3
GTEX-13CF2-0011-R5a-SM-5LZWS 28.3
GTEX-12WSH-0011-R5b-SM-5P9F3 28.2
GTEX-RU72-0011-R5A-SM-2TF6U 28.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 27.7
GTEX-13X6K-0011-R5b-SM-5PNUE 27.2
GTEX-13FXS-0011-R5b-SM-5LZYE 27.1
GTEX-13JUV-0011-R5a-SM-5LZY5 26.9
GTEX-13FLW-0011-R5a-SM-5LZX6 26.8
GTEX-13CZV-0011-R5a-SM-5K7XA 26.5
GTEX-T2IS-0011-R5A-SM-32QP4 26.0
GTEX-X585-0011-R5A-SM-46MVI 26.0
GTEX-S7SE-0011-R5A-SM-2XCDA 25.7
GTEX-139T8-0011-R5b-SM-5J1MO 25.6
GTEX-132Q8-0011-R5a-SM-5IJDM 25.5
GTEX-12WSF-0011-R5a-SM-5HL8K 25.4
GTEX-13S7M-0011-R5b-SM-5P9HS 25.1
GTEX-RVPU-0011-R5A-SM-2XCAD 25.0
GTEX-12ZZX-0011-R5a-SM-5HL89 24.9
GTEX-13SLX-0011-R5a-SM-5O9BV 24.8
GTEX-UTHO-0011-R5A-SM-3GIJD 24.7
GTEX-YJ89-0011-R5a-SM-4V6GM 24.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 24.1
GTEX-14ABY-0011-R5b-SM-5SI7B 24.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 23.7
GTEX-1477Z-0011-R5b-SM-5PNUO 22.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 22.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 22.2
GTEX-11OF3-0011-R5a-SM-57WB4 22.0
GTEX-14BIM-0011-R5b-SM-5S2RM 21.9
GTEX-13X6J-0011-R5b-SM-5PNWT 21.8
GTEX-12WSC-0011-R5b-SM-5CVNS 20.9
GTEX-13G51-0011-R5a-SM-5L3EB 20.6
GTEX-13VXU-0011-R5a-SM-5O9D7 20.5
GTEX-145MG-0011-R5b-SM-5S2VU 20.4
GTEX-T5JC-0011-R5A-SM-32PLK 19.2
GTEX-1399T-0011-R5b-SM-5IJDK 19.0
GTEX-1313W-0011-R5b-SM-5L3EP 18.9
GTEX-145MH-0011-R5a-SM-5P9JT 18.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 17.0
GTEX-TSE9-0011-R5A-SM-3DB7J 15.4
GTEX-13NZA-0011-R5b-SM-5KM4K 14.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

465.8

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 465.8
FF:10164-103B2 76 years, female 616.9
FF:10379-105H1 89 years, female 314.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.