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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:23.6RPKM
FANTOM5:54.7Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:High
 

Antibody staining

Antibody HPA020451

 

Antibody HPA029804

 

Antibody HPA029805

 

Glial cells

Low   Low   Low  

Neuronal cells

Low   High   High  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

23.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 23.6
Samples: 117

Max RPKM: 37.6
Min RPKM: 11.5
Std RPKM: 4.6
Median RPKM: 22.8
GTEX-P44H-0011-R5A-SM-2XCEX 37.6
GTEX-T2IS-0011-R5A-SM-32QP4 35.3
GTEX-12WSB-0011-R5b-SM-5GU67 34.8
GTEX-12WSA-0011-R5b-SM-5GU5I 33.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 31.5
GTEX-PVOW-0011-R5A-SM-32PL7 31.5
GTEX-139TT-0011-R5b-SM-5K7W8 30.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 30.8
GTEX-WVLH-0011-R5A-SM-3MJFW 30.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 30.3
GTEX-13X6I-0011-R5a-SM-5PNWW 30.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 29.8
GTEX-13JUV-0011-R5a-SM-5LZY5 29.8
GTEX-XMD1-0011-R5A-SM-4AT47 29.8
GTEX-OHPN-0011-R5A-SM-2I5FF 29.0
GTEX-11H98-0011-R5b-SM-57WCF 28.6
GTEX-13CZV-0011-R5a-SM-5K7XA 28.5
GTEX-ZE7O-0011-R5a-SM-57WBO 28.4
GTEX-144GO-0011-R5a-SM-5PNUR 28.3
GTEX-WWYW-0011-R5A-SM-3NB3E 28.3
GTEX-11WQC-0011-R5a-SM-5BC74 28.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 27.9
GTEX-QMR6-0011-R5A-SM-32PKT 27.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 27.8
GTEX-13OW6-0011-R5a-SM-5O9BK 27.6
GTEX-11GSP-0011-R5a-SM-57WBE 27.4
GTEX-131YS-0011-R5b-SM-5K7YB 27.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 27.1
GTEX-12WSD-0011-R5b-SM-5CVNG 27.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 26.8
GTEX-13FLV-0011-R5a-SM-5LZWT 26.5
GTEX-N7MT-0011-R5a-SM-2I3G6 26.5
GTEX-RVPU-0011-R5A-SM-2XCAD 26.2
GTEX-QVJO-0011-R5A-SM-2S1QM 26.0
GTEX-1445S-0011-R5a-SM-5PNUS 25.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 25.7
GTEX-S7SE-0011-R5A-SM-2XCDA 25.5
GTEX-13JVG-0011-R5a-SM-5MR4O 25.4
GTEX-132Q8-0011-R5a-SM-5IJDM 25.3
GTEX-R55E-0011-R5A-SM-2TC5N 25.3
GTEX-139TS-0011-R5b-SM-5J2MZ 25.2
GTEX-13G51-0011-R5a-SM-5L3EB 25.2
GTEX-1399T-0011-R5b-SM-5IJDK 25.0
GTEX-WZTO-0011-R5B-SM-3NMC5 25.0
GTEX-T6MN-0011-R5A-SM-32QPD 24.9
GTEX-ZXG5-0011-R5b-SM-57WBN 24.6
GTEX-ZVT3-0011-R5a-SM-51MSI 24.5
GTEX-YFC4-0011-R5a-SM-4RGLR 23.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 23.9
GTEX-13FLW-0011-R5a-SM-5LZX6 23.8
GTEX-RU72-0011-R5A-SM-2TF6U 23.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 23.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 23.6
GTEX-14BIM-0011-R5b-SM-5S2RM 23.6
GTEX-13OVL-0011-R5b-SM-5L3FU 23.5
GTEX-X585-0011-R5A-SM-46MVI 23.4
GTEX-13OVH-0011-R5b-SM-5KM4L 23.2
GTEX-NPJ7-0011-R5a-SM-33HBK 22.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 22.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 22.7
GTEX-N7MS-0011-R5a-SM-2HMK8 22.4
GTEX-RVPV-0011-R5A-SM-2TF69 22.4
GTEX-13X6K-0011-R5b-SM-5PNUE 22.3
GTEX-S7PM-0011-R5A-SM-3NM8G 22.3
GTEX-ZV68-0011-R5a-SM-4YCDW 22.3
GTEX-ZUA1-0011-R5b-SM-51MTG 22.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 22.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 22.1
GTEX-13O3O-0011-R5b-SM-5KM44 22.0
GTEX-X261-0011-R5A-SM-3NMB4 22.0
GTEX-13OW7-0011-R5b-SM-5O9DM 21.9
GTEX-OXRN-0011-R5A-SM-2I5EF 21.9
GTEX-13FXS-0011-R5b-SM-5LZYE 21.8
GTEX-X4XX-0011-R5A-SM-46MWN 21.8
GTEX-14ABY-0011-R5b-SM-5SI7B 21.7
GTEX-1313W-0011-R5b-SM-5L3EP 21.6
GTEX-12WSC-0011-R5b-SM-5CVNS 21.4
GTEX-13OW5-0011-R5b-SM-5L3FR 21.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 21.4
GTEX-13X6J-0011-R5b-SM-5PNWT 21.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 21.1
GTEX-NL4W-0011-R5a-SM-2I3GD 21.1
GTEX-145LS-0011-R5a-SM-5SI65 21.0
GTEX-12WSF-0011-R5a-SM-5HL8K 20.9
GTEX-12ZZX-0011-R5a-SM-5HL89 20.7
GTEX-11UD1-0011-R5b-SM-5P9FP 20.6
GTEX-13NYS-0011-R5a-SM-5MR4D 20.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 20.6
GTEX-11NV4-0011-R5a-SM-5NQ88 20.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 20.4
GTEX-14BIN-0011-R5b-SM-5SI78 20.4
GTEX-TSE9-0011-R5A-SM-3DB7J 20.2
GTEX-13CIG-0011-R5b-SM-5L3F2 20.1
GTEX-YJ89-0011-R5a-SM-4V6GM 20.1
GTEX-13VXU-0011-R5a-SM-5O9D7 20.0
GTEX-XOTO-0011-R5A-SM-4B657 19.9
GTEX-13SLX-0011-R5a-SM-5O9BV 19.7
GTEX-144GL-0011-R5b-SM-5PNUJ 19.6
GTEX-T5JC-0011-R5A-SM-32PLK 19.5
GTEX-11OF3-0011-R5a-SM-57WB4 19.4
GTEX-13S7M-0011-R5b-SM-5P9HS 19.3
GTEX-UTHO-0011-R5A-SM-3GIJD 19.1
GTEX-13CF2-0011-R5a-SM-5LZWS 19.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 18.9
GTEX-13NYB-0011-R5a-SM-5MR45 18.5
GTEX-145MH-0011-R5a-SM-5P9JT 18.1
GTEX-13112-0011-R5b-SM-5DUV8 18.0
GTEX-145MG-0011-R5b-SM-5S2VU 17.7
GTEX-13FHP-0011-R5b-SM-5LZY2 17.6
GTEX-NL3H-0011-R5a-SM-2I3GB 17.1
GTEX-1477Z-0011-R5b-SM-5PNUO 16.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 16.3
GTEX-139T8-0011-R5b-SM-5J1MO 15.5
GTEX-WL46-0011-R5A-SM-3LK6V 15.3
GTEX-Z93S-0011-R5b-SM-4RGNI 14.8
GTEX-12WSH-0011-R5b-SM-5P9F3 14.3
GTEX-13NZA-0011-R5b-SM-5KM4K 11.5
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

54.7

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 54.7
FF:10164-103B2 76 years, female 56.0
FF:10379-105H1 89 years, female 53.4

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