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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:35.1TPM
GTEx:20.7RPKM
FANTOM5:56.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA020451

  

Antibody HPA029804

  

Antibody HPA029805

  

Endothelial cells

 Low   Medium   Low  

Glandular cells

 High   High   High  

Peripheral nerve/ganglion

 Medium   High   High  
     
     
     

COLON - HPA RNA-seq

Average TPM

35.1
overview Male, age 54
Sample 1
TPM: 30.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 39.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 38.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 31.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 30.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 47.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 36.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 29.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 37.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 41.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 33.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 35.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 23.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

20.7

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 23.3
Samples: 149

Max RPKM: 39.1
Min RPKM: 14.2
Std RPKM: 3.8
Median RPKM: 22.7
GTEX-WI4N-2226-SM-4OOS9 39.1
GTEX-13FH7-1626-SM-5J2O9 32.8
GTEX-145ME-1126-SM-5SIAT 32.6
GTEX-148VJ-2426-SM-5NQ9Y 32.1
GTEX-13SLW-2826-SM-5Q5ES 31.7
GTEX-13O1R-2426-SM-5KLZZ 31.0
GTEX-13G51-2126-SM-5IJD9 30.6
GTEX-WHPG-1626-SM-4M1ZL 30.6
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 18.7
Samples: 196

Max RPKM: 37
Min RPKM: 6.6
Std RPKM: 5.3
Median RPKM: 17.2
GTEX-ZV6S-1226-SM-59HLH 37.0
GTEX-ZYVF-2826-SM-5GIDK 35.0
GTEX-148VJ-2626-SM-5QGPI 30.8
GTEX-T6MO-0826-SM-4DM51 29.9
GTEX-TKQ1-0626-SM-4DXTS 29.5
GTEX-11P81-1126-SM-5GU5G 29.3
GTEX-X5EB-0926-SM-46MVT 28.9
GTEX-11TTK-2426-SM-5PNYO 28.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

56.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 56.4
FF:10014-101C5 62,83,84 years, mixed 56.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.