Tissue expression of LRMP - Summary - The Human Protein Atlas

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LRMP

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TISSUE

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CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	LRMP
Gene description	Lymphoid-restricted membrane protein
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	9
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enhanced (lymph node, tonsil)
GTEx:	Tissue enhanced (spleen)
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Distinct cytoplasmic expression in lymphoid tissues, urothelium and pancreatic ducts.

DATA RELIABILITY
Data reliability description	Antibody staining consistent with RNA expression data.
Reliability score	Supported based on 2 antibodies. HPA002967 , HPA018505
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (lymph node, tonsil)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (spleen)
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	LRMP (HGNC Symbol)
Synonyms	JAW1
Description	Lymphoid-restricted membrane protein (HGNC Symbol)
Entrez gene summary	The protein encode dby this gene is expressed in a developmentally regulated manner in lymphoid cell lines and tissues. The protein is localized to the cytoplasmic face of the endoplasmic reticulum. [provided by RefSeq, Jul 2008]
Chromosome	12
Cytoband	p12.1
Chromosome location (bp)	25021002 - 25108334
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000118308 (version 83.38)
Entrez gene	4033
UniProt	Q12912 (UniProt - Evidence at protein level)
neXtProt	NX_Q12912
Antibodypedia	LRMP antibodies

PROTEIN BROWSER

LRMP-002	LRMP-003	LRMP-005	LRMP-006	LRMP-007	LRMP-008	LRMP-011	LRMP-012	LRMP-019

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
LRMP-002 ENSP00000446496 ENST00000548766	Q12912 [Direct mapping] Lymphoid-restricted membrane protein Processed lymphoid-restricted membrane protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000922 [spindle pole] GO:0002376 [immune system process] GO:0005635 [nuclear envelope] GO:0005694 [chromosome] GO:0005789 [endoplasmic reticulum membrane] GO:0005815 [microtubule organizing center] GO:0005887 [integral component of plasma membrane] GO:0006903 [vesicle targeting] GO:0006906 [vesicle fusion] GO:0007338 [single fertilization] GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	499 aa 56.2 kDa	No	1
LRMP-003 ENSP00000346442 ENST00000354454	Q12912 [Direct mapping] Lymphoid-restricted membrane protein Processed lymphoid-restricted membrane protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000922 [spindle pole] GO:0002376 [immune system process] GO:0005635 [nuclear envelope] GO:0005694 [chromosome] GO:0005783 [endoplasmic reticulum] GO:0005789 [endoplasmic reticulum membrane] GO:0005815 [microtubule organizing center] GO:0005887 [integral component of plasma membrane] GO:0006903 [vesicle targeting] GO:0006906 [vesicle fusion] GO:0007338 [single fertilization] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0030176 [integral component of endoplasmic reticulum membrane] Show all	499 aa 56.2 kDa	No	1
LRMP-005 ENSP00000450246 ENST00000547044	Q12912 [Direct mapping] Lymphoid-restricted membrane protein Processed lymphoid-restricted membrane protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000922 [spindle pole] GO:0002376 [immune system process] GO:0005635 [nuclear envelope] GO:0005694 [chromosome] GO:0005789 [endoplasmic reticulum membrane] GO:0005815 [microtubule organizing center] GO:0005887 [integral component of plasma membrane] GO:0006903 [vesicle targeting] GO:0006906 [vesicle fusion] GO:0007338 [single fertilization] GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	499 aa 56.2 kDa	No	1
LRMP-006 ENSP00000448534 ENST00000550945	F8VRE4 [Direct mapping] Lymphoid-restricted membrane protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		118 aa 13 kDa	No	0
LRMP-007 ENSP00000452116 ENST00000557489	G3V513 [Direct mapping] Lymphoid-restricted membrane protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		120 aa 13.3 kDa	No	0
LRMP-008 ENSP00000444056 ENST00000536173	F5H006 [Direct mapping] Lymphoid-restricted membrane protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] Show all	446 aa 50.4 kDa	No	1
LRMP-011 ENSP00000451048 ENST00000556887	A0A0G2JL87 [Direct mapping] Lymphoid-restricted membrane protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		8 aa 0.9 kDa	No	0
LRMP-012 ENSP00000450634 ENST00000554942	G3V2F6 [Direct mapping] Lymphoid-restricted membrane protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		77 aa 8.4 kDa	No	0
LRMP-019 ENSP00000450767 ENST00000555885	H0YJ39 [Direct mapping] Lymphoid-restricted membrane protein Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		69 aa 8.3 kDa	No	0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.