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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:26.8RPKM
FANTOM5:44.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA008297

 

Antibody HPA025922

 

Antibody CAB019277

 

Glial cells

Not detected   Not detected   Medium  

Neuronal cells

Medium   Medium   Medium  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

26.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 26.8
Samples: 117

Max RPKM: 46
Min RPKM: 11.4
Std RPKM: 6.7
Median RPKM: 26.3
GTEX-13JUV-0011-R5a-SM-5LZY5 46.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 43.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40.0
GTEX-12WSB-0011-R5b-SM-5GU67 39.3
GTEX-11H98-0011-R5b-SM-57WCF 38.8
GTEX-X585-0011-R5A-SM-46MVI 38.8
GTEX-XMD1-0011-R5A-SM-4AT47 38.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 37.5
GTEX-12WSA-0011-R5b-SM-5GU5I 36.5
GTEX-13FLV-0011-R5a-SM-5LZWT 36.4
GTEX-N7MT-0011-R5a-SM-2I3G6 36.1
GTEX-13JVG-0011-R5a-SM-5MR4O 35.8
GTEX-13NYS-0011-R5a-SM-5MR4D 35.7
GTEX-132Q8-0011-R5a-SM-5IJDM 35.4
GTEX-NL4W-0011-R5a-SM-2I3GD 35.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 34.9
GTEX-WWYW-0011-R5A-SM-3NB3E 34.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 34.0
GTEX-13X6I-0011-R5a-SM-5PNWW 34.0
GTEX-X261-0011-R5A-SM-3NMB4 34.0
GTEX-144GO-0011-R5a-SM-5PNUR 33.2
GTEX-131YS-0011-R5b-SM-5K7YB 33.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 33.1
GTEX-13G51-0011-R5a-SM-5L3EB 32.3
GTEX-QVJO-0011-R5A-SM-2S1QM 32.0
GTEX-TSE9-0011-R5A-SM-3DB7J 32.0
GTEX-P44H-0011-R5A-SM-2XCEX 31.7
GTEX-13OW6-0011-R5a-SM-5O9BK 31.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 31.6
GTEX-13X6K-0011-R5b-SM-5PNUE 31.5
GTEX-S7SE-0011-R5A-SM-2XCDA 31.1
GTEX-OHPN-0011-R5A-SM-2I5FF 31.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 30.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 30.8
GTEX-RU72-0011-R5A-SM-2TF6U 30.7
GTEX-WVLH-0011-R5A-SM-3MJFW 30.5
GTEX-11GSP-0011-R5a-SM-57WBE 30.4
GTEX-R55E-0011-R5A-SM-2TC5N 30.2
GTEX-12WSF-0011-R5a-SM-5HL8K 30.0
GTEX-ZUA1-0011-R5b-SM-51MTG 29.8
GTEX-T6MN-0011-R5A-SM-32QPD 29.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 28.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 28.8
GTEX-T2IS-0011-R5A-SM-32QP4 28.8
GTEX-13CIG-0011-R5b-SM-5L3F2 28.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 28.0
GTEX-1445S-0011-R5a-SM-5PNUS 27.9
GTEX-14BIM-0011-R5b-SM-5S2RM 27.9
GTEX-NL3H-0011-R5a-SM-2I3GB 27.8
GTEX-UTHO-0011-R5A-SM-3GIJD 27.8
GTEX-X4XX-0011-R5A-SM-46MWN 27.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 27.6
GTEX-1399T-0011-R5b-SM-5IJDK 27.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 27.5
GTEX-WZTO-0011-R5B-SM-3NMC5 27.1
GTEX-RVPV-0011-R5A-SM-2TF69 26.9
GTEX-13VXU-0011-R5a-SM-5O9D7 26.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 26.4
GTEX-13OVH-0011-R5b-SM-5KM4L 26.3
GTEX-13OVL-0011-R5b-SM-5L3FU 25.8
GTEX-13OW5-0011-R5b-SM-5L3FR 25.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 25.8
GTEX-13SLX-0011-R5a-SM-5O9BV 25.6
GTEX-13OW7-0011-R5b-SM-5O9DM 25.5
GTEX-13CZV-0011-R5a-SM-5K7XA 25.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 25.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 25.3
GTEX-145LS-0011-R5a-SM-5SI65 25.1
GTEX-N7MS-0011-R5a-SM-2HMK8 25.1
GTEX-139TS-0011-R5b-SM-5J2MZ 25.0
GTEX-12WSC-0011-R5b-SM-5CVNS 24.7
GTEX-YFC4-0011-R5a-SM-4RGLR 24.6
GTEX-ZE7O-0011-R5a-SM-57WBO 24.6
GTEX-ZV68-0011-R5a-SM-4YCDW 24.3
GTEX-14ABY-0011-R5b-SM-5SI7B 23.8
GTEX-XOTO-0011-R5A-SM-4B657 23.8
GTEX-PVOW-0011-R5A-SM-32PL7 23.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 23.6
GTEX-139T8-0011-R5b-SM-5J1MO 23.5
GTEX-QMR6-0011-R5A-SM-32PKT 23.5
GTEX-12ZZX-0011-R5a-SM-5HL89 23.3
GTEX-1313W-0011-R5b-SM-5L3EP 23.2
GTEX-ZXG5-0011-R5b-SM-57WBN 23.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 23.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 22.5
GTEX-139TT-0011-R5b-SM-5K7W8 22.4
GTEX-13FLW-0011-R5a-SM-5LZX6 22.4
GTEX-13FXS-0011-R5b-SM-5LZYE 22.4
GTEX-13NYB-0011-R5a-SM-5MR45 22.4
GTEX-T5JC-0011-R5A-SM-32PLK 22.3
GTEX-WL46-0011-R5A-SM-3LK6V 22.3
GTEX-13X6J-0011-R5b-SM-5PNWT 21.8
GTEX-RVPU-0011-R5A-SM-2XCAD 21.8
GTEX-11WQC-0011-R5a-SM-5BC74 21.6
GTEX-OXRN-0011-R5A-SM-2I5EF 21.5
GTEX-11OF3-0011-R5a-SM-57WB4 21.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 20.9
GTEX-11NV4-0011-R5a-SM-5NQ88 20.8
GTEX-13O3O-0011-R5b-SM-5KM44 20.7
GTEX-13S7M-0011-R5b-SM-5P9HS 20.3
GTEX-14BIN-0011-R5b-SM-5SI78 20.3
GTEX-145MH-0011-R5a-SM-5P9JT 20.1
GTEX-12WSD-0011-R5b-SM-5CVNG 19.6
GTEX-ZVT3-0011-R5a-SM-51MSI 19.6
GTEX-13112-0011-R5b-SM-5DUV8 19.1
GTEX-NPJ7-0011-R5a-SM-33HBK 18.8
GTEX-11UD1-0011-R5b-SM-5P9FP 18.3
GTEX-144GL-0011-R5b-SM-5PNUJ 18.3
GTEX-Z93S-0011-R5b-SM-4RGNI 16.2
GTEX-13CF2-0011-R5a-SM-5LZWS 15.4
GTEX-1477Z-0011-R5b-SM-5PNUO 15.4
GTEX-S7PM-0011-R5A-SM-3NM8G 15.2
GTEX-13FHP-0011-R5b-SM-5LZY2 14.7
GTEX-145MG-0011-R5b-SM-5S2VU 12.8
GTEX-YJ89-0011-R5a-SM-4V6GM 12.2
GTEX-12WSH-0011-R5b-SM-5P9F3 11.7
GTEX-13NZA-0011-R5b-SM-5KM4K 11.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

44.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 44.3
FF:10164-103B2 76 years, female 49.0
FF:10379-105H1 89 years, female 39.7

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