We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
CCDC53
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:15.1RPKM
FANTOM5:50.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA038338

 

Antibody HPA038339

 

Glial cells

Not detected   Medium  

Neuronal cells

Medium   Low  
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

15.1

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 15.1
Samples: 117

Max RPKM: 25
Min RPKM: 5.8
Std RPKM: 3.7
Median RPKM: 15.4
GTEX-T2IS-0011-R5A-SM-32QP4 25.0
GTEX-P44H-0011-R5A-SM-2XCEX 24.9
GTEX-12WSA-0011-R5b-SM-5GU5I 24.6
GTEX-139TT-0011-R5b-SM-5K7W8 24.3
GTEX-12WSF-0011-R5a-SM-5HL8K 23.6
GTEX-T6MN-0011-R5A-SM-32QPD 21.1
GTEX-QVJO-0011-R5A-SM-2S1QM 21.0
GTEX-1399T-0011-R5b-SM-5IJDK 20.9
GTEX-OHPN-0011-R5A-SM-2I5FF 20.4
GTEX-PVOW-0011-R5A-SM-32PL7 20.3
GTEX-ZUA1-0011-R5b-SM-51MTG 20.3
GTEX-X585-0011-R5A-SM-46MVI 19.6
GTEX-132Q8-0011-R5a-SM-5IJDM 19.2
GTEX-N7MS-0011-R5a-SM-2HMK8 19.1
GTEX-13X6K-0011-R5b-SM-5PNUE 19.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 18.9
GTEX-WVLH-0011-R5A-SM-3MJFW 18.9
GTEX-WWYW-0011-R5A-SM-3NB3E 18.9
GTEX-12WSB-0011-R5b-SM-5GU67 18.7
GTEX-TSE9-0011-R5A-SM-3DB7J 18.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 18.7
GTEX-11H98-0011-R5b-SM-57WCF 18.4
GTEX-11NV4-0011-R5a-SM-5NQ88 18.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 18.2
GTEX-R55E-0011-R5A-SM-2TC5N 17.9
GTEX-WZTO-0011-R5B-SM-3NMC5 17.8
GTEX-13FLV-0011-R5a-SM-5LZWT 17.7
GTEX-14BIM-0011-R5b-SM-5S2RM 17.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 17.6
GTEX-WL46-0011-R5A-SM-3LK6V 17.5
GTEX-13JUV-0011-R5a-SM-5LZY5 17.4
GTEX-UTHO-0011-R5A-SM-3GIJD 17.0
GTEX-XMD1-0011-R5A-SM-4AT47 16.7
GTEX-13X6J-0011-R5b-SM-5PNWT 16.5
GTEX-131YS-0011-R5b-SM-5K7YB 16.4
GTEX-13X6I-0011-R5a-SM-5PNWW 16.4
GTEX-N7MT-0011-R5a-SM-2I3G6 16.3
GTEX-S7SE-0011-R5A-SM-2XCDA 16.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 16.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 16.1
GTEX-Z93S-0011-R5b-SM-4RGNI 16.0
GTEX-13G51-0011-R5a-SM-5L3EB 15.9
GTEX-11GSP-0011-R5a-SM-57WBE 15.8
GTEX-12WSC-0011-R5b-SM-5CVNS 15.8
GTEX-13FLW-0011-R5a-SM-5LZX6 15.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 15.8
GTEX-RVPU-0011-R5A-SM-2XCAD 15.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 15.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 15.7
GTEX-13OW6-0011-R5a-SM-5O9BK 15.7
GTEX-13VXU-0011-R5a-SM-5O9D7 15.7
GTEX-145MH-0011-R5a-SM-5P9JT 15.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 15.6
GTEX-11OF3-0011-R5a-SM-57WB4 15.5
GTEX-12WSD-0011-R5b-SM-5CVNG 15.5
GTEX-144GO-0011-R5a-SM-5PNUR 15.5
GTEX-13CZV-0011-R5a-SM-5K7XA 15.4
GTEX-145LS-0011-R5a-SM-5SI65 15.4
GTEX-NL4W-0011-R5a-SM-2I3GD 15.4
GTEX-QMR6-0011-R5A-SM-32PKT 15.4
GTEX-NPJ7-0011-R5a-SM-33HBK 15.3
GTEX-13OW7-0011-R5b-SM-5O9DM 15.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 15.1
GTEX-X4XX-0011-R5A-SM-46MWN 15.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 14.9
GTEX-1313W-0011-R5b-SM-5L3EP 14.7
GTEX-RU72-0011-R5A-SM-2TF6U 14.3
GTEX-ZV68-0011-R5a-SM-4YCDW 14.2
GTEX-13O3O-0011-R5b-SM-5KM44 14.1
GTEX-13FXS-0011-R5b-SM-5LZYE 14.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 14.0
GTEX-ZXG5-0011-R5b-SM-57WBN 14.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 13.9
GTEX-11WQC-0011-R5a-SM-5BC74 13.8
GTEX-13NYB-0011-R5a-SM-5MR45 13.8
GTEX-13OVH-0011-R5b-SM-5KM4L 13.8
GTEX-14ABY-0011-R5b-SM-5SI7B 13.8
GTEX-139T8-0011-R5b-SM-5J1MO 13.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 13.5
GTEX-RVPV-0011-R5A-SM-2TF69 13.3
GTEX-XOTO-0011-R5A-SM-4B657 13.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 13.2
GTEX-13JVG-0011-R5a-SM-5MR4O 13.1
GTEX-NL3H-0011-R5a-SM-2I3GB 13.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 12.7
GTEX-T5JC-0011-R5A-SM-32PLK 12.6
GTEX-ZE7O-0011-R5a-SM-57WBO 12.6
GTEX-13CIG-0011-R5b-SM-5L3F2 12.5
GTEX-14BIN-0011-R5b-SM-5SI78 12.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 12.4
GTEX-13SLX-0011-R5a-SM-5O9BV 12.2
GTEX-YFC4-0011-R5a-SM-4RGLR 12.1
GTEX-13OVL-0011-R5b-SM-5L3FU 11.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 11.9
GTEX-13OW5-0011-R5b-SM-5L3FR 11.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 11.7
GTEX-13S7M-0011-R5b-SM-5P9HS 11.7
GTEX-OXRN-0011-R5A-SM-2I5EF 11.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 11.4
GTEX-YJ89-0011-R5a-SM-4V6GM 11.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 11.2
GTEX-13112-0011-R5b-SM-5DUV8 10.9
GTEX-X261-0011-R5A-SM-3NMB4 10.9
GTEX-13NYS-0011-R5a-SM-5MR4D 10.8
GTEX-139TS-0011-R5b-SM-5J2MZ 10.6
GTEX-1445S-0011-R5a-SM-5PNUS 10.6
GTEX-12ZZX-0011-R5a-SM-5HL89 10.5
GTEX-ZVT3-0011-R5a-SM-51MSI 10.5
GTEX-144GL-0011-R5b-SM-5PNUJ 10.1
GTEX-12WSH-0011-R5b-SM-5P9F3 9.7
GTEX-13FHP-0011-R5b-SM-5LZY2 9.1
GTEX-13CF2-0011-R5a-SM-5LZWS 8.6
GTEX-S7PM-0011-R5A-SM-3NM8G 8.6
GTEX-1477Z-0011-R5b-SM-5PNUO 8.3
GTEX-11UD1-0011-R5b-SM-5P9FP 7.9
GTEX-145MG-0011-R5b-SM-5S2VU 7.3
GTEX-13NZA-0011-R5b-SM-5KM4K 5.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

50.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 50.1
FF:10379-105H1 89 years, female 50.4
FF:10164-103B2 76 years, female 49.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.