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NECAB1
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    TISSUE

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    CELL

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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:79.9TPM
GTEx:9.2RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Medium
Neuronal cells:High
Neuropil:Medium
 

Antibody staining

Antibody HPA023252

 

Antibody HPA023629

 

Antibody HPA025963

 

Antibody HPA031262

 

Antibody CAB068208

 

Antibody CAB068209

 

Antibody CAB068210

 

Endothelial cells

Not detected   Not detected   Not detected   Low   Not detected   Not detected   Not detected  

Glial cells

Not detected   Not detected   Low   Not detected   Medium   Medium   Medium  

Neuronal cells

High   Medium   High   High   High   High   High  

Neuropil

Medium   Low   Low   Medium   High   Medium   Medium  
             
             
             

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

79.9

N/A Male, age 5
Sample 1
TPM: 80.7
overview Female, age 40
Sample 2
TPM: 45.3
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 113.8
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

9.2

GTEx sample id

RPKM

4.16.89.90.215.4024681012141618
 
4.16.89.90.215.4024681012141618

Brain - Cortex

Brain - Cortex
RPKM: 7.2
Samples: 114

Max RPKM: 19.5
Min RPKM: 0.2
Std RPKM: 3.7
Median RPKM: 6.9
GTEX-PVOW-2526-SM-2XCF7 19.5
GTEX-13NYC-2826-SM-5K7WR 15.4
GTEX-X585-3026-SM-46MWF 14.9
GTEX-11ZUS-2926-SM-5FQSL 14.6
GTEX-QMR6-1426-SM-32PLA 14.6
GTEX-WWYW-3126-SM-3NB39 14.1
GTEX-T2IS-3026-SM-32QPM 12.8
GTEX-12ZZX-2926-SM-5GCOQ 12.6
GTEX-UTHO-3026-SM-3GAFB 12.6
GTEX-WL46-2926-SM-3LK82 12.6
GTEX-11DXY-3226-SM-5GIDE 11.6
GTEX-QVJO-1426-SM-2S1QY 11.6
GTEX-ZUA1-3026-SM-59HJC 11.5
GTEX-WZTO-2926-SM-3NM9I 11.4
GTEX-11PRG-2926-SM-5987A 11.2
GTEX-1313W-3126-SM-5LZUI 11.2
GTEX-TSE9-3026-SM-3DB76 11.2
GTEX-145MH-3026-SM-5Q5DZ 11.0
GTEX-11NUK-2926-SM-5A5MD 10.6
GTEX-T6MN-2626-SM-32PMQ 10.6
GTEX-WVLH-3026-SM-3MJG9 10.6
GTEX-X4XX-3026-SM-3NMB2 10.5
GTEX-YFC4-3126-SM-5PNV6 10.4
GTEX-14BMV-3026-SM-5S2PQ 10.3
GTEX-T5JC-2426-SM-3NMDB 10.3
GTEX-Y8DK-0826-SM-4TT3T 10.3
GTEX-132Q8-3026-SM-5PNVG 10.1
GTEX-XLM4-3026-SM-4AT6L 10.1
GTEX-11NV4-2126-SM-5N9DS 9.9
GTEX-13FHO-3026-SM-5J1O9 9.8
GTEX-WHSE-3026-SM-3P5ZH 9.8
GTEX-13FHP-3026-SM-5IJBS 9.7
GTEX-ZAK1-3026-SM-5S2MJ 9.6
GTEX-111FC-3126-SM-5GZZ2 9.5
GTEX-ZYFD-3026-SM-5E44C 9.4
GTEX-12WSC-3026-SM-5GCNF 9.3
GTEX-Z93S-2926-SM-57WB9 9.2
GTEX-13O3Q-2926-SM-5KM45 9.1
GTEX-131YS-3126-SM-5KLYT 9.0
GTEX-13G51-3026-SM-5IJB8 9.0
GTEX-13OVH-3026-SM-5MR4N 8.8
GTEX-117XS-3026-SM-5N9CA 8.7
GTEX-RNOR-2326-SM-2TF4I 8.7
GTEX-14ASI-3026-SM-5S2PN 8.6
GTEX-13FXS-3126-SM-5J2NN 8.5
GTEX-NPJ8-1526-SM-2D7VU 8.3
GTEX-13NYS-3126-SM-5KLYV 8.2
GTEX-13VXU-2926-SM-5LU5C 8.2
GTEX-145LS-3126-SM-5Q5BY 8.2
GTEX-QDT8-2926-SM-32PKC 8.1
GTEX-Y111-2726-SM-4TT3N 8.1
GTEX-13FLW-1426-SM-5K7YE 7.9
GTEX-12ZZY-3026-SM-5GCOU 7.8
GTEX-13OW6-3026-SM-5J2MI 7.6
GTEX-1192X-3126-SM-5N9BY 7.5
GTEX-R55F-1326-SM-5S2V4 7.1
GTEX-144GL-3026-SM-5Q5CW 6.9
GTEX-145MF-2726-SM-5O995 6.8
GTEX-XOTO-3026-SM-4B65M 6.8
GTEX-11GSO-2926-SM-5HL73 6.6
GTEX-12126-1026-SM-5P9JJ 6.3
GTEX-13NYB-3026-SM-5IJD7 6.3
GTEX-13X6J-3026-SM-5Q5CU 6.3
GTEX-N7MT-1126-SM-5SI7V 6.3
GTEX-1399T-3026-SM-5KLZC 6.2
GTEX-13O3O-3126-SM-5KM3H 6.1
GTEX-13X6K-2926-SM-5Q5D5 5.8
GTEX-QVUS-2826-SM-3GADB 5.7
GTEX-RU72-3026-SM-5SI7Y 5.7
GTEX-NPJ7-2726-SM-2I3FT 5.6
GTEX-Q2AG-2926-SM-2HMJ3 5.6
GTEX-13SLX-3126-SM-5S2Q5 5.4
GTEX-1128S-2726-SM-5H12C 5.2
GTEX-11ONC-2926-SM-5P9JM 5.2
GTEX-YJ89-3026-SM-5IFJI 5.2
GTEX-11OC5-0726-SM-5P9JK 5.1
GTEX-13OW8-2826-SM-5L3GC 5.0
GTEX-11DXW-1126-SM-5H12Q 4.9
GTEX-12ZZZ-3026-SM-5BC67 4.8
GTEX-11GS4-3126-SM-5A5LH 4.7
GTEX-12WSH-3026-SM-5CVNI 4.7
GTEX-14A5I-2926-SM-5Q5CQ 4.6
GTEX-11WQK-3026-SM-5EQL6 4.4
GTEX-OXRN-2426-SM-2I5EQ 4.3
GTEX-13OVJ-2826-SM-5L3GW 4.2
GTEX-13QIC-2926-SM-5J2NF 4.1
GTEX-13PL6-3126-SM-5LUAR 4.0
GTEX-ZAJG-3126-SM-5HL9J 4.0
GTEX-ZVT3-3026-SM-5E43N 3.9
GTEX-145MG-3026-SM-5RQJA 3.6
GTEX-13JVG-3126-SM-5L3FH 3.5
GTEX-13PVQ-3026-SM-5SI93 3.5
GTEX-12WSA-2926-SM-5EQ4D 3.4
GTEX-13JUV-2926-SM-5LZX7 3.4
GTEX-147GR-3026-SM-5S2ML 3.2
GTEX-12ZZW-2926-SM-5LZUP 3.1
GTEX-ZZPT-3026-SM-5GZXH 3.0
GTEX-1117F-3226-SM-5N9CT 2.9
GTEX-11EI6-3026-SM-5GZZO 2.8
GTEX-11EMC-3226-SM-5EGKW 2.8
GTEX-11O72-2926-SM-5BC4V 2.5
GTEX-139T8-1026-SM-5J2MC 2.5
GTEX-11TTK-2926-SM-5PNYP 2.4
GTEX-13S7M-3126-SM-5RQJQ 2.4
GTEX-PWO3-0926-SM-2I5EY 2.3
GTEX-144FL-3026-SM-5O99C 2.2
GTEX-131XW-3126-SM-5LZUC 2.0
GTEX-13IVO-2926-SM-5L3CZ 1.9
GTEX-12WSD-3126-SM-5HL7P 1.7
GTEX-13OW7-3026-SM-5L3GY 1.7
GTEX-11GSP-3226-SM-5986O 1.4
GTEX-1445S-3026-SM-5O9BR 1.4
GTEX-ZE7O-3126-SM-5HL5X 1.1
GTEX-11OF3-2926-SM-5HL78 0.2
Show all
4.99.517.50.134.3051015202530
 
4.99.517.50.134.3051015202530

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 11.4
Samples: 108

Max RPKM: 34.3
Min RPKM: 0.1
Std RPKM: 8.2
Median RPKM: 9.5
GTEX-X585-0011-R10A-SM-46MUY 34.3
GTEX-WL46-0011-R10A-SM-3MJFQ 32.3
GTEX-QDT8-0011-R10A-SM-32PKG 31.6
GTEX-QVJO-0011-R10A-SM-2S1QJ 30.7
GTEX-Q2AG-0011-R10A-SM-2HMLA 29.1
GTEX-WVLH-0011-R10A-SM-3MJFM 27.4
GTEX-12WSE-0011-R10b-SM-5P9JV 26.9
GTEX-131YS-0011-R10b-SM-5EQ5N 25.4
GTEX-T6MN-0011-R10A-SM-32QP7 25.3
GTEX-Y8DK-0011-R10A-SM-4SOK1 23.7
GTEX-NL3H-0011-R10A-SM-2I3E9 22.5
GTEX-YFC4-0011-R10a-SM-4SOK5 22.1
GTEX-S7SE-0011-R10A-SM-2XCDF 21.5
GTEX-12ZZX-0011-R10b-SM-5DUWK 20.9
GTEX-X4XX-0011-R10B-SM-46MWO 20.3
GTEX-12WSM-0011-R10a-SM-5DUWV 20.1
GTEX-132Q8-0011-R10b-SM-5DUWZ 19.6
GTEX-T5JC-0011-R10A-SM-32PM2 19.6
GTEX-WZTO-0011-R10B-SM-4E3KB 19.4
GTEX-1313W-0011-R10b-SM-5DUXA 19.0
GTEX-YJ89-0011-R10a-SM-4SOK9 18.5
GTEX-13X6K-0011-R10a-SM-5P9JR 18.4
GTEX-131XH-0011-R10a-SM-5EGLJ 18.2
GTEX-145MG-0011-R10a-SM-5PNWG 18.1
GTEX-13O3Q-0011-R10b-SM-5KM39 17.9
GTEX-13FLW-0011-R10b-SM-5LZZF 17.8
GTEX-145MH-0011-R10b-SM-5PNUK 17.8
GTEX-13X6J-0011-R10b-SM-5PNWA 17.4
GTEX-XLM4-0011-R10A-SM-4AT5P 17.2
GTEX-13FHO-0011-R10b-SM-5J2MM 16.4
GTEX-13X6I-0011-R10a-SM-5PNWI 15.9
GTEX-ZF28-0011-R10a-SM-4WWEH 15.9
GTEX-12WSF-0011-R10a-SM-5LZVH 15.7
GTEX-13S7M-0011-R10b-SM-5PNZB 15.5
GTEX-N7MS-0011-R10A-SM-2HMJK 15.4
GTEX-NPJ7-0011-R10A-SM-2I3E5 15.2
GTEX-12ZZZ-0011-R10a-SM-5P9HC 15.0
GTEX-WWYW-0011-R10A-SM-3NB35 14.8
GTEX-12ZZY-0011-R10b-SM-5HL7W 14.4
GTEX-QMR6-0011-R10A-SM-32PKO 14.1
GTEX-11ZUS-0011-R10b-SM-5BC79 13.2
GTEX-145LS-0011-R10a-SM-5PNUQ 13.1
GTEX-12126-0011-R10b-SM-5BC6T 12.9
GTEX-13G51-0011-R10b-SM-5LZYF 12.7
GTEX-NPJ8-0011-R10A-SM-2YUMO 12.1
GTEX-ZAB4-0011-R10a-SM-4SOKH 11.3
GTEX-11H98-0011-R10b-SM-5NQ98 11.0
GTEX-12WSC-0011-R10a-SM-5GU57 10.7
GTEX-ZDXO-0011-R10a-SM-4WWD8 10.5
GTEX-14BIN-0011-R10a-SM-5S2UA 10.2
GTEX-ZVZQ-0011-R10b-SM-51MRT 10.0
GTEX-13CZV-0011-R10b-SM-5LZYD 9.9
GTEX-13OVL-0011-R10a-SM-5L3GS 9.7
GTEX-P44H-0011-R10A-SM-2XCEK 9.6
GTEX-13QIC-0011-R10a-SM-5O9C7 9.4
GTEX-Z93S-0011-R10a-SM-4RGNM 9.4
GTEX-N7MT-0011-R10A-SM-2I3E1 8.8
GTEX-13FXS-0011-R10a-SM-5J2MA 8.6
GTEX-12WSH-0011-R10a-SM-5LZUS 8.2
GTEX-X4EP-0011-R10B-SM-4QASJ 8.0
GTEX-13RTJ-0011-R10b-SM-5O9CW 7.9
GTEX-ZUA1-0011-R10a-SM-51MT6 7.9
GTEX-QVUS-0011-R10A-SM-3GIK3 7.7
GTEX-147GR-0011-R10b-SM-5S2UM 7.6
GTEX-14BIL-0011-R10a-SM-5SI75 7.5
GTEX-XMD1-0011-R10A-SM-4AT4A 7.5
GTEX-13NYB-0011-R10a-SM-5KM43 6.9
GTEX-14ASI-0011-R10b-SM-5S2VZ 6.8
GTEX-13N1W-0011-R10b-SM-5MR4H 6.7
GTEX-TSE9-0011-R10A-SM-3DB7O 6.5
GTEX-OXRN-0011-R10A-SM-2I5GC 6.4
GTEX-139TS-0011-R10a-SM-5K7TU 6.0
GTEX-13OW8-0011-R10a-SM-5L3H6 5.8
GTEX-13OW6-0011-R10a-SM-5L3HE 5.6
GTEX-ZXG5-0011-R10a-SM-57WDD 5.5
GTEX-13NYS-0011-R10a-SM-5MR4S 5.4
GTEX-ZVT3-0011-R10b-SM-57WB6 5.4
GTEX-13OW7-0011-R10a-SM-5L3H3 5.2
GTEX-13QJC-0011-R10a-SM-5SI63 5.0
GTEX-11WQK-0011-R10a-SM-5BC6R 4.9
GTEX-13JUV-0011-R10b-SM-5LZXR 4.9
GTEX-13FLV-0011-R10b-SM-5LZZ2 4.7
GTEX-ZE7O-0011-R10a-SM-57WAZ 4.6
GTEX-145LU-0011-R10a-SM-5PNWJ 4.5
GTEX-13SLX-0011-R10a-SM-5P9HV 4.1
GTEX-NL4W-0011-R10A-SM-2I3DY 4.1
GTEX-13N2G-0011-R10a-SM-5MR34 4.0
GTEX-147F4-0011-R10b-SM-5S2WC 3.9
GTEX-13O3O-0011-R10a-SM-5LUA9 3.6
GTEX-13SLW-0011-R10a-SM-5S2UI 3.4
GTEX-12WSD-0011-R10b-SM-5GU79 3.2
GTEX-12ZZW-0011-R10b-SM-5HL9X 2.8
GTEX-13JVG-0011-R10b-SM-5KM2P 2.7
GTEX-RVPU-0011-R10A-SM-2XCAH 2.7
GTEX-X261-0011-R10B-SM-4E3JT 2.6
GTEX-12WSA-0011-R10b-SM-5P9ET 2.5
GTEX-13FTZ-0011-R10b-SM-5KLZS 2.5
GTEX-OXRO-0011-R10A-SM-2I5EH 2.1
GTEX-13OVJ-0011-R10b-SM-5L3HT 2.0
GTEX-11GSP-0011-R10a-SM-5NQ7J 1.8
GTEX-13NZA-0011-R10b-SM-5KM54 1.8
GTEX-11WQC-0011-R10a-SM-57WCT 1.5
GTEX-13IVO-0011-R10a-SM-5LZY3 1.4
GTEX-14753-0011-R10b-SM-5S2WE 1.0
GTEX-1477Z-0011-R10b-SM-5S2RF 0.8
GTEX-1445S-0011-R10a-SM-5PNWB 0.7
GTEX-ZV68-0011-R10a-SM-51MT7 0.4
GTEX-131XW-0011-R10a-SM-5DUVA 0.1
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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