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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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SYMPK
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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

SYMPK

Gene description

Symplekin

Protein class

Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

7
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic and nuclear expression in all tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
HPA041756
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

SYMPK (HGNC Symbol)

Synonyms

SPK, SYM

Description

Symplekin (HGNC Symbol)

Entrez gene summary

This gene encodes a nuclear protein that functions in the regulation of polyadenylation and promotes gene expression. The protein forms a high-molecular weight complex with components of the polyadenylation machinery. It is thought to serve as a scaffold for recruiting regulatory factors to the polyadenylation complex. It also participates in 3'-end maturation of histone mRNAs, which do not undergo polyadenylation. The protein also localizes to the cytoplasmic plaques of tight junctions in some cell types. [provided by RefSeq, Jul 2008]

Chromosome

19

Cytoband

q13.32

Chromosome location (bp)

45815410 - 45863290

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000125755 (version 83.38)

Entrez gene

8189

UniProt

Q92797 (UniProt - Evidence at protein level)

neXtProt

NX_Q92797

Antibodypedia

SYMPK antibodies

PROTEIN BROWSER

SYMPK-001
SYMPK-005
SYMPK-008
SYMPK-011
SYMPK-012
SYMPK-014
SYMPK-021

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

SYMPK-001
ENSP00000245934
ENST00000245934
Q92797 [Direct mapping]
Symplekin
A0A024R0R6 [Target identity:100%; Query identity:100%]
Symplekin, isoform CRA_a
Show all
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005488 [binding]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005856 [cytoskeleton]
GO:0005886 [plasma membrane]
GO:0005923 [bicellular tight junction]
GO:0006378 [mRNA polyadenylation]
GO:0007155 [cell adhesion]
GO:0035307 [positive regulation of protein dephosphorylation]
Show all
1274 aa
141.1 kDa
No 0
SYMPK-005
ENSP00000479480
ENST00000599460
A0A087WUE9 [Direct mapping]
Symplekin
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005488 [binding]
Show all
1058 aa
117.4 kDa
No 0
SYMPK-008
ENSP00000478599
ENST00000599814
A0A087WUE9 [Direct mapping]
Symplekin
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005488 [binding]
Show all
1058 aa
117.4 kDa
No 0
SYMPK-011
ENSP00000471770
ENST00000594293
M0R1C2 [Direct mapping]
Symplekin
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
115 aa
12.7 kDa
No 0
SYMPK-012
ENSP00000471694
ENST00000598059
M0R180 [Direct mapping]
Symplekin
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005488 [binding]
Show all
137 aa
15.3 kDa
No 0
SYMPK-014
ENSP00000470977
ENST00000601600
M0R039 [Direct mapping]
Symplekin
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
50 aa
5.2 kDa
No 0
SYMPK-021
ENSP00000469296
ENST00000602061
M0QXP5 [Direct mapping]
Symplekin
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005488 [binding]
Show all
142 aa
15.8 kDa
No 0

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