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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:28.1RPKM
FANTOM5:47.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA038135

 

Antibody HPA038136

 

Antibody CAB017187

 

Glial cells

Not detected   Medium   Medium  

Neuronal cells

Not detected   Not detected   Medium  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

28.1

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 28.1
Samples: 117

Max RPKM: 65.3
Min RPKM: 7.7
Std RPKM: 8.7
Median RPKM: 26.9
GTEX-X4XX-0011-R5A-SM-46MWN 65.3
GTEX-WL46-0011-R5A-SM-3LK6V 52.6
GTEX-QMR6-0011-R5A-SM-32PKT 47.5
GTEX-13X6I-0011-R5a-SM-5PNWW 47.3
GTEX-13OVH-0011-R5b-SM-5KM4L 44.9
GTEX-RVPV-0011-R5A-SM-2TF69 44.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 43.3
GTEX-13O3O-0011-R5b-SM-5KM44 42.1
GTEX-XMD1-0011-R5A-SM-4AT47 39.5
GTEX-XOTO-0011-R5A-SM-4B657 39.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 39.0
GTEX-13JVG-0011-R5a-SM-5MR4O 38.2
GTEX-139T8-0011-R5b-SM-5J1MO 37.8
GTEX-X261-0011-R5A-SM-3NMB4 37.4
GTEX-13NYB-0011-R5a-SM-5MR45 36.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 36.4
GTEX-Z93S-0011-R5b-SM-4RGNI 36.1
GTEX-N7MS-0011-R5a-SM-2HMK8 35.9
GTEX-R55E-0011-R5A-SM-2TC5N 35.8
GTEX-X585-0011-R5A-SM-46MVI 35.5
GTEX-YFC4-0011-R5a-SM-4RGLR 35.5
GTEX-13X6K-0011-R5b-SM-5PNUE 35.4
GTEX-ZXG5-0011-R5b-SM-57WBN 35.2
GTEX-144GO-0011-R5a-SM-5PNUR 35.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 34.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 34.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 34.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 33.8
GTEX-144GL-0011-R5b-SM-5PNUJ 33.7
GTEX-12WSA-0011-R5b-SM-5GU5I 33.6
GTEX-WZTO-0011-R5B-SM-3NMC5 33.3
GTEX-PVOW-0011-R5A-SM-32PL7 31.9
GTEX-14BIN-0011-R5b-SM-5SI78 31.8
GTEX-13FLV-0011-R5a-SM-5LZWT 31.7
GTEX-139TS-0011-R5b-SM-5J2MZ 31.6
GTEX-11GSP-0011-R5a-SM-57WBE 31.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 31.2
GTEX-13OW7-0011-R5b-SM-5O9DM 31.0
GTEX-RVPU-0011-R5A-SM-2XCAD 31.0
GTEX-WVLH-0011-R5A-SM-3MJFW 31.0
GTEX-11NV4-0011-R5a-SM-5NQ88 30.6
GTEX-13FHP-0011-R5b-SM-5LZY2 30.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 30.6
GTEX-13FXS-0011-R5b-SM-5LZYE 30.5
GTEX-ZE7O-0011-R5a-SM-57WBO 30.2
GTEX-1445S-0011-R5a-SM-5PNUS 29.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 29.8
GTEX-13S7M-0011-R5b-SM-5P9HS 29.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 29.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 29.5
GTEX-12ZZX-0011-R5a-SM-5HL89 28.7
GTEX-13OW6-0011-R5a-SM-5O9BK 28.6
GTEX-13FLW-0011-R5a-SM-5LZX6 28.3
GTEX-13OW5-0011-R5b-SM-5L3FR 28.0
GTEX-S7PM-0011-R5A-SM-3NM8G 27.9
GTEX-11WQC-0011-R5a-SM-5BC74 27.7
GTEX-QVJO-0011-R5A-SM-2S1QM 27.5
GTEX-T5JC-0011-R5A-SM-32PLK 27.2
GTEX-RU72-0011-R5A-SM-2TF6U 26.9
GTEX-WWYW-0011-R5A-SM-3NB3E 26.9
GTEX-131YS-0011-R5b-SM-5K7YB 26.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 26.6
GTEX-NPJ7-0011-R5a-SM-33HBK 26.4
GTEX-N7MT-0011-R5a-SM-2I3G6 26.0
GTEX-T6MN-0011-R5A-SM-32QPD 26.0
GTEX-12WSH-0011-R5b-SM-5P9F3 25.8
GTEX-12WSB-0011-R5b-SM-5GU67 25.7
GTEX-12WSD-0011-R5b-SM-5CVNG 25.7
GTEX-11UD1-0011-R5b-SM-5P9FP 25.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 25.4
GTEX-13OVL-0011-R5b-SM-5L3FU 24.9
GTEX-13SLX-0011-R5a-SM-5O9BV 24.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 24.8
GTEX-132Q8-0011-R5a-SM-5IJDM 24.6
GTEX-145MH-0011-R5a-SM-5P9JT 24.5
GTEX-145LS-0011-R5a-SM-5SI65 24.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 24.3
GTEX-139TT-0011-R5b-SM-5K7W8 24.0
GTEX-13CZV-0011-R5a-SM-5K7XA 23.9
GTEX-TSE9-0011-R5A-SM-3DB7J 23.8
GTEX-NL4W-0011-R5a-SM-2I3GD 23.6
GTEX-14BIM-0011-R5b-SM-5S2RM 23.5
GTEX-ZV68-0011-R5a-SM-4YCDW 23.5
GTEX-14ABY-0011-R5b-SM-5SI7B 23.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 23.2
GTEX-12WSF-0011-R5a-SM-5HL8K 22.8
GTEX-ZUA1-0011-R5b-SM-51MTG 22.6
GTEX-ZVT3-0011-R5a-SM-51MSI 22.0
GTEX-1399T-0011-R5b-SM-5IJDK 21.8
GTEX-UTHO-0011-R5A-SM-3GIJD 21.7
GTEX-1477Z-0011-R5b-SM-5PNUO 21.5
GTEX-13G51-0011-R5a-SM-5L3EB 21.2
GTEX-11H98-0011-R5b-SM-57WCF 20.8
GTEX-S7SE-0011-R5A-SM-2XCDA 20.5
GTEX-P44H-0011-R5A-SM-2XCEX 20.1
GTEX-OHPN-0011-R5A-SM-2I5FF 20.0
GTEX-13VXU-0011-R5a-SM-5O9D7 19.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 19.6
GTEX-13CF2-0011-R5a-SM-5LZWS 19.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 19.3
GTEX-13JUV-0011-R5a-SM-5LZY5 18.6
GTEX-1313W-0011-R5b-SM-5L3EP 18.4
GTEX-YJ89-0011-R5a-SM-4V6GM 18.3
GTEX-13X6J-0011-R5b-SM-5PNWT 18.2
GTEX-OXRN-0011-R5A-SM-2I5EF 17.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 17.5
GTEX-13112-0011-R5b-SM-5DUV8 17.5
GTEX-12WSC-0011-R5b-SM-5CVNS 17.4
GTEX-13NYS-0011-R5a-SM-5MR4D 17.0
GTEX-11OF3-0011-R5a-SM-57WB4 16.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 16.8
GTEX-13CIG-0011-R5b-SM-5L3F2 16.3
GTEX-13NZA-0011-R5b-SM-5KM4K 16.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 14.6
GTEX-NL3H-0011-R5a-SM-2I3GB 14.2
GTEX-145MG-0011-R5b-SM-5S2VU 13.3
GTEX-T2IS-0011-R5A-SM-32QP4 7.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

47.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 47.6
FF:10164-103B2 76 years, female 58.5
FF:10379-105H1 89 years, female 36.6

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