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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA056030

 

Antibody HPA063513

 

Antibody CAB000039

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  DakoCytomation
 

Product name

HPA056030   HPA063513   Z0334  

Host species

Rabbit   Rabbit   Rabbit  

Clonality

pAb   pAb   pAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

     

Released in version

12   14   1  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA056030

 

Antibody HPA063513

 

Antibody CAB000039

 
Immunocytochemistry

Supported      
Immunohistochemistry


Validated
 

Validated
  Supported  
Western blot

Uncertain   Supported   Supported  
Protein array

Supported   Approved    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA056030

 

Antibody HPA063513

 

Antibody CAB000039

 

Standard validation

Supported      

     

Figure description

Immunofluorescent staining of human cell line HEK 293 shows localization to intermediate filaments.      

Antibody dilution

1:55      

Literature conformity

The subcellular location is supported by literature.      

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA056030

 

Antibody HPA063513

 

Antibody CAB000039

 

Formal validation: Independent

Validated

Spearman correlation >0.6 for protein expression in tissues using independent antibodies.
 
Validated

Spearman correlation >0.6 for protein expression in tissues using independent antibodies.
   

 

 
 

   

Figure description

Distribution of protein expression (antibody staining).
Spearman correlation with HPA063513 across 75 cell types.
  Distribution of protein expression (antibody staining).
Spearman correlation with HPA056030 across 75 cell types.
   
 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human cerebral cortex shows distinct cytoplasmic positivity in astrocytes and neuropil.   Immunohistochemical staining of human cerebral cortex shows moderate positivity in astrocytes.   Immunohistochemical staining of human cerebral cortex shows distinct positivity in astrocytes.  

Expression

RNA: detected in 32 tissues
Protein: detected in 4 cell types
  RNA: detected in 32 tissues
Protein: detected in 8 cell types
  RNA: detected in 32 tissues
Protein: detected in 6 cell types
 

Retrieval

HIER pH6   HIER pH6   Proteinase K.  

Antibody dilution

1:550   1:18000   1:2000  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.  
 

Standard validation

Supported      

     

Figure description

Subsets of astrocytes were distinctly stained, most abundant in hippocampus, piriform area and rostral migratory stream.      

WESTERN BLOT

 
 

Antibody HPA056030

 

Antibody HPA063513

 

Antibody CAB000039

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

     

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

49.9   50.3, 49.9, 49.5, 29.8, 28.5, 21.3   50.3, 49.9, 49.5, 29.8, 28.5, 22.4, 21.3, 11.4, 7.1, 6.6, 1.4, 1.1  

Antibody dilution

1:180   1:230   1:500  

PROTEIN ARRAY

 
 

Antibody HPA056030

 

Antibody HPA063513

 

Antibody CAB000039

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
   

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:2200   1:2800    

ANTIGEN INFORMATION

 
 

Antibody HPA056030

 

Antibody HPA063513

 

Antibody CAB000039

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Native protein  

Length (aa)

61   49    

Antigen sequence

LEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIVVKTVEMRDGE
VIKESKQEHKD
 
NKALAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERD
   

Matching transcripts

GFAP-001 - ENSP00000253408 [100%]
  GFAP-001 - ENSP00000253408 [100%]
GFAP-002 - ENSP00000403962 [100%]
GFAP-005 - ENSP00000465320 [100%]
GFAP-006 - ENSP00000466163 [100%]
GFAP-018 - ENSP00000465629 [100%]
GFAP-024 - ENSP00000468500 [100%]
   

Other gene match

     
ANTIGEN VIEW
GFAP-001
GFAP-002
GFAP-005
GFAP-006
GFAP-018
GFAP-024
 

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.