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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:249.7RPKM
FANTOM5:1029.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA001830

 

Antibody CAB000360

 

Glial cells

Medium   Not detected  

Neuronal cells

Medium   Not detected  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

249.7

GTEx sample id

RPKM

103.6238.6380.213.2698.2050100150200250300350400450500550600650
 
103.6238.6380.213.2698.2050100150200250300350400450500550600650

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 249.7
Samples: 117

Max RPKM: 698.2
Min RPKM: 13.2
Std RPKM: 158.3
Median RPKM: 238.6
GTEX-T2IS-0011-R5A-SM-32QP4 698.2
GTEX-139TT-0011-R5b-SM-5K7W8 697.8
GTEX-131YS-0011-R5b-SM-5K7YB 518.5
GTEX-P44H-0011-R5A-SM-2XCEX 505.1
GTEX-S7SE-0011-R5A-SM-2XCDA 494.1
GTEX-13G51-0011-R5a-SM-5L3EB 493.8
GTEX-145MH-0011-R5a-SM-5P9JT 492.7
GTEX-11OF3-0011-R5a-SM-57WB4 479.0
GTEX-1399T-0011-R5b-SM-5IJDK 463.8
GTEX-1313W-0011-R5b-SM-5L3EP 461.2
GTEX-UTHO-0011-R5A-SM-3GIJD 456.2
GTEX-13X6J-0011-R5b-SM-5PNWT 454.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 454.1
GTEX-PVOW-0011-R5A-SM-32PL7 450.1
GTEX-WL46-0011-R5A-SM-3LK6V 439.8
GTEX-QVJO-0011-R5A-SM-2S1QM 432.3
GTEX-X585-0011-R5A-SM-46MVI 432.3
GTEX-Z93S-0011-R5b-SM-4RGNI 430.0
GTEX-12WSC-0011-R5b-SM-5CVNS 426.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 422.1
GTEX-T5JC-0011-R5A-SM-32PLK 414.2
GTEX-14ABY-0011-R5b-SM-5SI7B 412.6
GTEX-T6MN-0011-R5A-SM-32QPD 406.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 400.8
GTEX-WVLH-0011-R5A-SM-3MJFW 395.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 394.7
GTEX-145LS-0011-R5a-SM-5SI65 389.0
GTEX-13VXU-0011-R5a-SM-5O9D7 387.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 386.9
GTEX-14BIM-0011-R5b-SM-5S2RM 380.2
GTEX-13SLX-0011-R5a-SM-5O9BV 377.1
GTEX-WZTO-0011-R5B-SM-3NMC5 370.6
GTEX-WWYW-0011-R5A-SM-3NB3E 365.8
GTEX-12WSF-0011-R5a-SM-5HL8K 365.7
GTEX-11NV4-0011-R5a-SM-5NQ88 357.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 355.9
GTEX-13O3O-0011-R5b-SM-5KM44 351.4
GTEX-ZUA1-0011-R5b-SM-51MTG 341.8
GTEX-N7MS-0011-R5a-SM-2HMK8 337.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 331.2
GTEX-11GSP-0011-R5a-SM-57WBE 329.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 327.6
GTEX-11H98-0011-R5b-SM-57WCF 317.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 317.0
GTEX-13S7M-0011-R5b-SM-5P9HS 316.2
GTEX-13OVL-0011-R5b-SM-5L3FU 313.2
GTEX-13FXS-0011-R5b-SM-5LZYE 309.2
GTEX-13FLW-0011-R5a-SM-5LZX6 295.9
GTEX-N7MT-0011-R5a-SM-2I3G6 295.5
GTEX-13X6I-0011-R5a-SM-5PNWW 290.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 289.9
GTEX-TSE9-0011-R5A-SM-3DB7J 284.5
GTEX-13X6K-0011-R5b-SM-5PNUE 283.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 274.6
GTEX-R55E-0011-R5A-SM-2TC5N 268.9
GTEX-132Q8-0011-R5a-SM-5IJDM 265.2
GTEX-13OW6-0011-R5a-SM-5O9BK 262.2
GTEX-13CZV-0011-R5a-SM-5K7XA 242.5
GTEX-RU72-0011-R5A-SM-2TF6U 238.6
GTEX-13OW7-0011-R5b-SM-5O9DM 227.2
GTEX-13JUV-0011-R5a-SM-5LZY5 223.9
GTEX-12WSD-0011-R5b-SM-5CVNG 220.3
GTEX-13NYB-0011-R5a-SM-5MR45 210.3
GTEX-13NYS-0011-R5a-SM-5MR4D 196.5
GTEX-RVPU-0011-R5A-SM-2XCAD 194.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 192.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 189.2
GTEX-13FLV-0011-R5a-SM-5LZWT 186.9
GTEX-QMR6-0011-R5A-SM-32PKT 186.3
GTEX-RVPV-0011-R5A-SM-2TF69 184.6
GTEX-13OW5-0011-R5b-SM-5L3FR 171.5
GTEX-13OVH-0011-R5b-SM-5KM4L 169.6
GTEX-12ZZX-0011-R5a-SM-5HL89 167.7
GTEX-12WSB-0011-R5b-SM-5GU67 164.2
GTEX-14BIN-0011-R5b-SM-5SI78 160.3
GTEX-ZE7O-0011-R5a-SM-57WBO 158.6
GTEX-ZXG5-0011-R5b-SM-57WBN 152.6
GTEX-XOTO-0011-R5A-SM-4B657 150.3
GTEX-YFC4-0011-R5a-SM-4RGLR 148.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 147.5
GTEX-NL3H-0011-R5a-SM-2I3GB 145.8
GTEX-NL4W-0011-R5a-SM-2I3GD 140.0
GTEX-OHPN-0011-R5A-SM-2I5FF 139.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 137.1
GTEX-XMD1-0011-R5A-SM-4AT47 114.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 111.6
GTEX-12WSA-0011-R5b-SM-5GU5I 111.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 103.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 100.3
GTEX-YJ89-0011-R5a-SM-4V6GM 99.4
GTEX-OXRN-0011-R5A-SM-2I5EF 97.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 94.1
GTEX-144GO-0011-R5a-SM-5PNUR 92.2
GTEX-13JVG-0011-R5a-SM-5MR4O 89.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 87.5
GTEX-13CIG-0011-R5b-SM-5L3F2 79.7
GTEX-12WSH-0011-R5b-SM-5P9F3 77.9
GTEX-ZVT3-0011-R5a-SM-51MSI 73.9
GTEX-11WQC-0011-R5a-SM-5BC74 72.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 70.5
GTEX-X4XX-0011-R5A-SM-46MWN 69.1
GTEX-NPJ7-0011-R5a-SM-33HBK 56.8
GTEX-X261-0011-R5A-SM-3NMB4 56.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 52.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50.5
GTEX-13112-0011-R5b-SM-5DUV8 47.7
GTEX-ZV68-0011-R5a-SM-4YCDW 46.9
GTEX-139TS-0011-R5b-SM-5J2MZ 41.0
GTEX-13FHP-0011-R5b-SM-5LZY2 36.3
GTEX-1477Z-0011-R5b-SM-5PNUO 27.6
GTEX-1445S-0011-R5a-SM-5PNUS 25.7
GTEX-S7PM-0011-R5A-SM-3NM8G 25.2
GTEX-13CF2-0011-R5a-SM-5LZWS 21.8
GTEX-13NZA-0011-R5b-SM-5KM4K 20.8
GTEX-11UD1-0011-R5b-SM-5P9FP 17.0
GTEX-139T8-0011-R5b-SM-5J1MO 14.5
GTEX-145MG-0011-R5b-SM-5S2VU 13.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

1029.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 1029.2
FF:10379-105H1 89 years, female 1080.4
FF:10164-103B2 76 years, female 978.0

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